Locus 587

Sequence ID dm3.chr2L
Location 4,151,724 – 4,151,806
Length 82
Max. P 0.750999
window779

overview

Window 9

Location 4,151,724 – 4,151,806
Length 82
Sequences 6
Columns 85
Reading direction reverse
Mean pairwise identity 86.91
Shannon entropy 0.24727
G+C content 0.52547
Mean single sequence MFE -28.02
Consensus MFE -22.50
Energy contribution -22.20
Covariance contribution -0.30
Combinations/Pair 1.35
Mean z-score -1.63
Structure conservation index 0.80
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.58
SVM RNA-class probability 0.750999
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr2L 4151724 82 - 23011544
GGGAAAAUCCAGAGAAAGGAGUUUUCCUGGCCAGCCGCCAGUUGGCAAAAAGGAGCGACUUUCGG---AAGAAAGGAGCUGCCAC
((((((((((.......))).))))))).((((((.....)))))).....(((((..(((((..---..)))))..))).)).. ( -35.20, z-score =  -3.87, R)
>droAna3.scaffold_12943 723069 83 + 5039921
GGUAAAAUCCAGAG--AGGAGUUUUCCUGGCUGGUCGCCAGUUGGCAUAAAGAAGCAACUUUGCGUCUCUAAAAGGAGUUGAUGC
(((.....((((..--(((......)))..))))..)))(((((.(........))))))..(((((.((......))..))))) ( -20.70, z-score =  -0.10, R)
>droEre2.scaffold_4929 4216466 82 - 26641161
GGGAAAAUCCAGAGAAAGGAGUUUUCCUGGCCAGCCGCCAGUUGGCAAAAAGGAGUGGCUUUUGG---AAGAAAGGAGCUGCCAC
((((((((((.......))).))))))).((((((.....))))))......(.(..((((((..---.....))))))..)).. ( -27.30, z-score =  -1.16, R)
>droYak2.chr2L 4177616 82 - 22324452
GGGAAAAUCCAGAGAAAGGAGUUUUCCUGGCCAGCCGCCAGUUGGCACAAAGGAGCGACUUUUGG---AAGAAAGGCUCUGUCAC
((((((((((.......))).)))))))(((.(((((((....))).((((((.....)))))).---......))))..))).. ( -26.90, z-score =  -1.04, R)
>droSec1.super_5 2250141 82 - 5866729
GGGAAAAUCCAGAGAAAGGAGUUUUCCUGGCCAGCCGCCAGUUGGCGAAAAGGAGCGAUUUUCGG---AAGAACGGAGCUGCCAC
((((((((((.......))).))))))).((((((.....)))))).....(((((..(.(((..---..))).)..))).)).. ( -29.00, z-score =  -1.81, R)
>droSim1.chr2L 4107164 82 - 22036055
GGGAAAAUCCAGAGAAAGGAGUUUUCCUGGCCAGCCGCCAGUUGGCGAAAAGGAGCGAUUUUCGG---AAGAACGGAGCUGCCAC
((((((((((.......))).))))))).((((((.....)))))).....(((((..(.(((..---..))).)..))).)).. ( -29.00, z-score =  -1.81, R)
>consensus
GGGAAAAUCCAGAGAAAGGAGUUUUCCUGGCCAGCCGCCAGUUGGCAAAAAGGAGCGACUUUCGG___AAGAAAGGAGCUGCCAC
((((((((((.......))).))))))).((((((.....)))))).....(((((..(((((.......)))))..))).)).. (-22.50 = -22.20 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:30 2011