| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,924,645 – 1,924,736 |
| Length | 91 |
| Max. P | 0.811262 |
| Location | 1,924,645 – 1,924,736 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 73.29 |
| Shannon entropy | 0.51754 |
| G+C content | 0.59629 |
| Mean single sequence MFE | -35.57 |
| Consensus MFE | -17.53 |
| Energy contribution | -18.57 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.811262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1924645 91 - 24543557 GCUAUCCUCGUCGGGAUUUGAAUUCGCCAGCUCGUGCGGUCGAGCAUCCUGGCCAGAAUUGCCAGUGCCACUGCCAUUGCCAUUGGCAGUC ......((.((((((((..(....)....(((((......))))))))))))).)).((((((((((.((.......)).)))))))))). ( -31.40, z-score = -0.84, R) >droEre2.scaffold_4784 1913684 85 - 25762168 GCUGUCGUCGUCGGGAUUGGGAUUCGCCAGCUCGUGCGGUCGACCAUCCUGGCCAG------CAUUGCCAUUGCCAUUGGCAGUGGCAACC ((((.....((((((((.((...(((((.((....)))).))))))))))))))))------).(((((((((((...))))))))))).. ( -40.80, z-score = -2.97, R) >droYak2.chr3L 1878762 91 - 24197627 GCUGUCGUCGUCGGGAUUGGGAUUCGCCAGGUCGUGCGGUCGACCAUCCUGGCCAGAAUUGCCAUUGCCAUGGCCAUUGGCAGUGGCAGUC ....((...(((((((((((......)))(((((......)))))))))))))..))(((((((((((((.......))))))))))))). ( -42.40, z-score = -2.56, R) >droSec1.super_2 1950171 91 - 7591821 GCUGUCCUCGUCGGGAUUGGUAUUCGGCAGCUCGUGCGGUCGACCAUCCUGGCCAGAAUUGCCAGUGCCGCUGCCACUGCCAUUGGCACUC ((.((.((.((((((((.((...(((((.((....)).))))))))))))))).)).)).)).(((((((..((....))...))))))). ( -34.80, z-score = -0.79, R) >droSim1.chr3L 1479830 91 - 22553184 GCUGUCCUCGUCUGGAUUGGGAUUCGCCAGCUCGUGCGGUCGACCAUCCUGGCCAGAAUUGCCAGUGCCACUGCCAUUGCCAUUGGCACUC ..........(((((.(..(((((((((.((....)))).)))..))))..))))))..((((((((.((.......)).))))))))... ( -32.90, z-score = -0.94, R) >anoGam1.chr2L 19184794 78 - 48795086 ---------GCUGUUGCUGUUGUGCAGUGG-UGGUGGGGUCCACCACCACCACCA---CUACCAUUACUGCUGCUGUUGUUAGUUACAUGU ---------((.((.((.((.(((.(((((-((((((((....)).)))))))))---))..))).)).)).)).)).............. ( -31.10, z-score = -1.43, R) >consensus GCUGUCCUCGUCGGGAUUGGGAUUCGCCAGCUCGUGCGGUCGACCAUCCUGGCCAGAAUUGCCAGUGCCACUGCCAUUGCCAGUGGCACUC .........(((((((.(((...((((........))))....))))))))))......((((((((.((.......)).))))))))... (-17.53 = -18.57 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:46 2011