| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,922,134 – 1,922,227 |
| Length | 93 |
| Max. P | 0.969684 |
| Location | 1,922,134 – 1,922,227 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 79.27 |
| Shannon entropy | 0.42006 |
| G+C content | 0.33395 |
| Mean single sequence MFE | -16.59 |
| Consensus MFE | -14.13 |
| Energy contribution | -14.65 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.969684 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 1922134 93 + 24543557 --AAAAAGGCUUGGCAAUUAAUUUGUCGUGGCUAAUGCCGAAUAAAAACAAA--------------AUACCGAACACAAUUGCAAUAUGAAAAGCCAAAAGAAUAACAA --.....((((((((((.....))))).((((....))))............--------------.........................)))))............. ( -16.70, z-score = -1.56, R) >droSim1.chr3L 1477359 93 + 22553184 --AAAAAGGCUUGGCAAUUAAUUUGCCGUGGCUAAUGCCGAAUGAAAACAAA--------------AUACCGAACACAAUUGCAAUAUGAAAAGCCAAAAGAAUAACAA --.....((((((((((.....))))).((((....))))............--------------.........................)))))............. ( -19.40, z-score = -2.30, R) >droSec1.super_2 1947719 93 + 7591821 --AAAAAGGCUUGGCAAUUAAUUUGCCGUGGCUAAUGCCGAAUGAAAACAAA--------------AUACCGAACACAAUUGCAAUAUGAAAAGCCAAAAGAAUAACAA --.....((((((((((.....))))).((((....))))............--------------.........................)))))............. ( -19.40, z-score = -2.30, R) >droYak2.chr3L 1876182 93 + 24197627 --AAAAAGGCUUGGUAAUUAAUUUGCCAUGGCUAAUGCCGAAUGAAAACAAA--------------AUACCAAACACAAUUGCAAUAUGAAAAGCCAAAAGAAUAACAA --.....((((((((((.....))))).((((....))))............--------------.........................)))))............. ( -17.50, z-score = -2.02, R) >droEre2.scaffold_4784 1911239 93 + 25762168 --AAAAAGGCUUGGCAAUUAAUUUGCCGUGGCUAAUGCCGAAUGAAAACAAA--------------AUACCAAACACAAUUGCAAUAUGAAAAGCCAAAAGAAUAACAA --.....((((((((((.....))))).((((....))))............--------------.........................)))))............. ( -19.40, z-score = -2.23, R) >droAna3.scaffold_13337 22384568 85 - 23293914 --UAAAGGGCUUGGCAAUUAAUUUGCCAUGGCUAAUGCCAAACAUAAACAAA--------------AUAC-------AAUUGCAAUAUGGAAAGCCCAAAGAAUAACA- --....(((((((((((.....))))).((((....))))..((((..(((.--------------....-------..)))...))))..))))))...........- ( -23.80, z-score = -3.18, R) >dp4.chrXR_group6 5105206 86 + 13314419 -AAAUGAGGCUUGGCAAUUAAUUUGCCGUGGCUAAUGCCAAACAUAAACAAA--------------AUAC-------AAUUGCAAUAUGAAAAGCCAAAAGAAUAACA- -......((((((((((.....))))).((((....))))..((((..(((.--------------....-------..)))...))))..)))))............- ( -20.20, z-score = -2.52, R) >droVir3.scaffold_13049 15849028 98 - 25233164 -------GGCUCGACAAUUAAUUUGCCGUGGCUAAUACCAAACAACAACAAAGAACUACGAA----AAUCUAAAUACAAUUCCAAUAUGAAAAGCCAAAAGAAUAACAA -------(((..............))).(((((..................(((........----..)))........(((......))).)))))............ ( -8.94, z-score = -0.52, R) >droMoj3.scaffold_6680 11370207 88 + 24764193 -------GGCUUGCCAAUUAAUUUGCCGUGCCUAAUGCCAAACAAUAACAGA--------------AAUUCAAACACAAUUGCGAUAUGAAAAGCCCAAAGAAUAACAA -------(((((..((.....((((.(((.....))).))))..........--------------.((((((......))).))).))..)))))............. ( -8.70, z-score = 0.95, R) >droGri2.scaffold_15110 6778036 104 + 24565398 UCAACGCGGCUUGGCAAUUAAUUUGCCGUGGCUAAUGCCAAACAACAACAAC-AUCAACAAA----AAUAUAAAUACAAUUGCAAUAUGAAAAGACGAAAGAAUAACAA .....((((...(((((.....))))).((((....))))............-.........----.............))))............(....)........ ( -16.80, z-score = -1.36, R) >droWil1.scaffold_180916 1168873 108 - 2700594 -AAACUCGGCUCGGCAAUCAAUUUACCGUUCCUAAUGCUAAACAUAAACAAAAAACAAUGAAAGCAGUACACAAAACAAUUGCAAUAUGAAAAGCCAAAAGAAUAACAA -......(((((((.((.....)).)))..............((((..((........))...(((((..........)))))..))))...))))............. ( -11.70, z-score = -0.27, R) >consensus __AAAAAGGCUUGGCAAUUAAUUUGCCGUGGCUAAUGCCAAACAAAAACAAA______________AUACCAAACACAAUUGCAAUAUGAAAAGCCAAAAGAAUAACAA .......((((((((((.....))))).((((....))))...................................................)))))............. (-14.13 = -14.65 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:45 2011