| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,913,843 – 1,913,954 |
| Length | 111 |
| Max. P | 0.908346 |
| Location | 1,913,843 – 1,913,954 |
|---|---|
| Length | 111 |
| Sequences | 7 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 65.46 |
| Shannon entropy | 0.64012 |
| G+C content | 0.44628 |
| Mean single sequence MFE | -32.51 |
| Consensus MFE | -13.34 |
| Energy contribution | -12.87 |
| Covariance contribution | -0.46 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.908346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1913843 111 - 24543557 ----------UGUAGAUCAUUUGUUGGGUACCGCCCCAUUCUAUAAAGGGGCGGGAUCAUGACGUUGGCAAAUCUAAUGGGCUUAACUGCCAUUAGGUUGCUUAACUUUCGUCAAUGAAAU ----------......((((......(((.(((((((..........))))))).))).(((((..(((((.((((((((.(......)))))))))))))).......)))))))))... ( -39.10, z-score = -3.45, R) >droSim1.chr3L 1469215 111 - 22553184 ----------UGUGGAUCAUUUGUCGGGUACCGCCCCAUUCUAUAAAGGGGCGGGAUCAUGACGUUGGCAAAUCUACUGGGCUUAACUACCAUUAGGUUGCUUAACUUUCGUCAAUGAAAU ----------......(((((.(((((((.(((((((..........))))))).))).))))((((((((.((((.(((.........))).)))))))).)))).......)))))... ( -36.70, z-score = -2.73, R) >droSec1.super_2 1939543 111 - 7591821 ----------UGUAGAUCAUUUGUCGGGUACCGCCCCGUUCUAUAAAGGGGCGGGAACAUGACGUUGGCAAAUCCAAGGGGUUUAACUACCAUUAGGUUGCUUAACUUUCGUCAAUGAAAU ----------......(((((.((((.((.(((((((..........)))))))..)).))))((((((((..((....(((......)))....)))))).)))).......)))))... ( -34.10, z-score = -1.66, R) >droYak2.chr3L 1867762 111 - 24197627 ----------UGUAGAUCAGUUGUCGGGUGCCGCCCCUUUCUAUAUAGAGGCGGGAUCAUGACGUUGAAUAAUAUAAUGGGCAUAACUGCCAGUGGAUAACUCAGCUUUCUUCAAUAAAAU ----------((.(((......(((((((.(((((.((........)).))))).))).))))(((((......((...((((....))))..))......)))))..))).))....... ( -30.60, z-score = -1.20, R) >droEre2.scaffold_4784 1902577 104 - 25762168 ----------UGUGGAUCAUUUGUCGGGUACCGCCCCUUUCUAUAUAGCGGCGGGAUCUAGAUGUUCGAUAAGAAAAUA-----AACUGUCAUUAGGCA--UUAACUUACGUCUAUAAAAU ----------(((((((..(((((((..(((((((.((........)).)))))........))..)))))))......-----...((((....))))--.........))))))).... ( -24.50, z-score = -0.86, R) >dp4.chrXR_group6 5095199 111 - 13314419 UGCAAAGCAACGGUGAU-AUCUGACAGGCCACGCCUCCAUCUAUCUAGGGGCGGAACUUACUCGUUUCACACUUGAUGGGG--UUGCUUGCAUU-------CCAGUUUGGAUCAAUCGAUU (((((.(((((((((..-.((.....))...))))((((((......(..((((.......))))..)......)))))))--))))))))).(-------((.....))).......... ( -31.70, z-score = -0.92, R) >droPer1.super_9 3405163 111 - 3637205 UGCAAAGCAACGGUGAU-AUCUGACAGGCCACGCCUCCAUCUAUCUAGGGGCGGAACUCAGUCGUUUCACACUUGAUAGGG--UUGCUUGCAUU-------CCAGUUUGGAUCAAUCGAUU (((((.(((((.((((.-...((((((..(.((((((..........)))))))..))..))))..)))).((....)).)--))))))))).(-------((.....))).......... ( -30.90, z-score = -0.60, R) >consensus __________UGUAGAUCAUUUGUCGGGUACCGCCCCAUUCUAUAUAGGGGCGGGAUCAUGACGUUGGAAAAUCUAAUGGG__UAACUGCCAUUAGGUU_CUUAACUUUCGUCAAUGAAAU ......................(((((...(((((((..........)))))))..))..))).......................................................... (-13.34 = -12.87 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:44 2011