| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,908,575 – 1,908,667 |
| Length | 92 |
| Max. P | 0.884675 |
| Location | 1,908,575 – 1,908,667 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 68.99 |
| Shannon entropy | 0.53396 |
| G+C content | 0.37108 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -6.82 |
| Energy contribution | -8.41 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.80 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.884675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1908575 92 - 24543557 -----------------GUAUUUUCCUUUCAACGGAACUAGAGGCCUGUGACGUAUAACAUAGAUCUUUCUAGUUUAUGCGUCAAAUCUCGCUAUUGAUUAUUGACAAA -----------------...........((((..(.....((((....((((((((((..((((....))))..))))))))))..)))).)..))))........... ( -22.50, z-score = -2.72, R) >droPer1.super_9 3399071 108 - 3637205 GGAUUUCCCUUCAGUCGGCGAUUUGCAUUCGGUGGUGCUCAAUUAGAGCUCCACG-AAUGUGGAUCUUUCAUGUGUAUCUGUUAAAUAUCGCAAUUGAUUAUUGACUAA ((....))....((((((.((((..((((((.(((.((((.....)))).)))))-))))..))))..((((((((((.......))).))))..)))...)))))).. ( -34.50, z-score = -3.29, R) >dp4.chrXR_group6 5089097 108 - 13314419 GGAUUUCCCUUCAGUCGGCUAUUUGCAUUCGGUGGUGCUCAAUUAGAGCUCCACG-AAUGUGGAUCUUUCAUGUGUAUCUGUUAAAUAUCGCAAUUGAUUAUUGACUAA ((....))....((((((..(((..((((((.(((.((((.....)))).)))))-))))..)))...((((((((((.......))).))))..)))...)))))).. ( -30.40, z-score = -2.39, R) >droEre2.scaffold_4784 1897349 90 - 25762168 -----------------GUAUUUCCCUUUUAGCGAAACUACAGGUC--UGACGUAUAACAUAGGUCUUUCUAUUUGAUGUGUCACAUCUCGCUAUUGAUUAUUGACAAA -----------------((..........((((((.......(((.--((((((((...(((((....)))))...)))))))).)))))))))..........))... ( -16.86, z-score = -1.03, R) >droYak2.chr3L 1862338 90 - 24197627 -----------------GCAUUUCCCUUUCAAUGAAACUAGAGAGC--UGACGUAUAAUAUAGAUCUUUCUAGUUUAUGCGUCAAAUCUCACUAUUGAUUAUUGACAAA -----------------...........(((((((.....((((..--((((((((((..((((....))))..))))))))))..)))).(....).))))))).... ( -25.40, z-score = -4.79, R) >droSec1.super_2 1934186 90 - 7591821 -----------------GUAUUUCCCUUUCAUCGGAACUAGAGGCC--UGACGUAUUACAUAGAUCUUUCUAGUUUAUGCGUCAAAUCUCUCUAUUGAUUAUUGACAAA -----------------....((((........))))..(((((..--((((((((....((((....))))....))))))))..))))).................. ( -20.70, z-score = -2.68, R) >droSim1.chr3L 1463866 90 - 22553184 -----------------GUACUUCCCUUUCAGCGGAACUAGAGGCC--UGACGUAUAACAUAGAUCUUUCUAGCUUAUGCGUCAAAUCUCGCUAUUGAUUAUUGACAAA -----------------...........((((..(.....((((..--((((((((((..((((....))))..))))))))))..)))).)..))))........... ( -23.10, z-score = -2.73, R) >consensus _________________GUAUUUCCCUUUCAGCGGAACUAGAGGCC__UGACGUAUAACAUAGAUCUUUCUAGUUUAUGCGUCAAAUCUCGCUAUUGAUUAUUGACAAA ............................((((................(((((((((...((((....))))...)))))))))((((........)))).)))).... ( -6.82 = -8.41 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:42 2011