| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,893,032 – 1,893,122 |
| Length | 90 |
| Max. P | 0.824488 |
| Location | 1,893,032 – 1,893,122 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 77.40 |
| Shannon entropy | 0.43997 |
| G+C content | 0.39653 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -11.41 |
| Energy contribution | -10.75 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1893032 90 + 24543557 AUAAUUUAUUGCUCAUACGACCCGUGUGCGUGUGGGUAUUUUCACUUCCUUCUUCUCUUCCAAGGGGGAAAUGCAGAAAAUGUGUGGAAU .........((((((((((((....)).)))))))))).(((((((((((((((.......)))))))))..(((.....))))))))). ( -26.20, z-score = -2.13, R) >droSim1.chr3L 1448286 87 + 22553184 AUAAUUUAUUGCUCAUACGACCCGUGUGCGUGUGGGUAUUUUCACUUCCUUCU---CUUCCAAGGGGGAAAUGCAGAAAAUGUGUGGAAU .........((((((((((((....)).)))))))))).((((((((((((((---......))))))))..(((.....))))))))). ( -25.90, z-score = -2.14, R) >droSec1.super_2 1918891 87 + 7591821 AUAAUUUAUUGCUCAUACGACCCGUGUGCGUGUGGGUAUUUUCAAUUCCUUCU---CUUCCAAGGGGGAAAUGCAGAAAAUGUGUGAAAU .........((((((((((((....)).)))))))))).((((..((((((((---......))))))))(((((.....))))))))). ( -24.00, z-score = -1.98, R) >droYak2.chr3L 1846533 89 + 24197627 AUAAUUUAUUGCUCAUACGACCCUUGUUCGUGUGGGUGAUUUUAUUUUCUUCAUUUUUUCCAAGGGGAAAAGG-AGGAAAAAUGUGGAAU .(((...((..(((((((((.......)))))))))..)).)))((((((((.((((..(....)..)))).)-)))))))......... ( -27.50, z-score = -3.27, R) >droEre2.scaffold_4784 1880660 87 + 25762168 AUAAUUUAUUGCUCAUACGACCCGUGUUCGUGCGGGUAUUUUCAUUUGCUUCU---UUUUCAAGGGGGAAAAGCAGAAAAUGUGUGGAAU ............((((((.((((((......))))))((((((...(((((.(---((((....))))).)))))))))))))))))... ( -23.90, z-score = -2.07, R) >droWil1.scaffold_180916 1124826 82 - 2700594 AUAAUUUAUGGCCCAU------CAUGUGUGUGUGUGU-UUGUGAUUGUGUGCAGAGAGACCAACACACACGGGGAAAAAAAAU-UGAAAU .((((((.(..(((..------..(((((((((((.(-((.((........)).))).))..))))))))))))...).))))-)).... ( -21.30, z-score = -1.26, R) >consensus AUAAUUUAUUGCUCAUACGACCCGUGUGCGUGUGGGUAUUUUCAUUUCCUUCU___CUUCCAAGGGGGAAAUGCAGAAAAUGUGUGGAAU .........((((((((((.........)))))))))).((((..((((((..........))))))))))................... (-11.41 = -10.75 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:39 2011