| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,849,324 – 1,849,383 |
| Length | 59 |
| Max. P | 0.500000 |
| Location | 1,849,324 – 1,849,383 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 86.95 |
| Shannon entropy | 0.22788 |
| G+C content | 0.47458 |
| Mean single sequence MFE | -15.70 |
| Consensus MFE | -13.26 |
| Energy contribution | -13.62 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 1849324 59 + 24543557 UCCCGACGGGGAGCUGCAAGUUUAGAGCAAAUGGUCAAUCUAUUAUGGCCAAAGAAAAU ((((....))))(((..........)))...((((((........))))))........ ( -13.70, z-score = -0.95, R) >droSim1.chr3L 1403317 59 + 22553184 UCCCGACGGGGAGCUCCAAGUUUAGAGCAGAUGGUCAAUCUAUUAUGGCCAAGGAAAAU ((((....))))((((........))))...((((((........))))))........ ( -17.30, z-score = -1.68, R) >droSec1.super_2 1875088 59 + 7591821 UCCCGACGGGGAGCUCCAAGUUUAGAGCAGAUGGCCAAUCUAUUAUGGCCAAGGAAAAU ((((....))))((((........))))...((((((........))))))........ ( -20.00, z-score = -2.34, R) >droYak2.chr3L 1802239 59 + 24197627 UCCCGACGGGGAGCUCUAAGUUAAUUGCAGAUGGCAAGUCAGUUGUGGCCAAGGAAAAU ((((....))))(((.(((.(...((((.....))))...).))).))).......... ( -12.30, z-score = 0.40, R) >droEre2.scaffold_4784 1837165 59 + 25762168 UCCCGACGGGGAGCACCGAGUUUAGUGCAGAUGGUAAUUCAGUUAUGGUCAAGGAAAAU ((((....))))((((........)))).(((.(((((...))))).)))......... ( -15.20, z-score = -1.51, R) >consensus UCCCGACGGGGAGCUCCAAGUUUAGAGCAGAUGGUCAAUCUAUUAUGGCCAAGGAAAAU ((((....))))((((........))))...((((((........))))))........ (-13.26 = -13.62 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:38 2011