| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,848,514 – 1,848,605 |
| Length | 91 |
| Max. P | 0.525669 |
| Location | 1,848,514 – 1,848,605 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 70.65 |
| Shannon entropy | 0.53400 |
| G+C content | 0.38171 |
| Mean single sequence MFE | -14.30 |
| Consensus MFE | -8.92 |
| Energy contribution | -8.92 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.65 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1848514 91 + 24543557 GGCGCGUGCUGUUCAGACACGCAGUCUACAAAAUCACUGCAAUAUGAGGUAACUACAUCCUAGCAUCUUAAUACUAAAUAAAUCAAAAAUC .(((((((((....)).)))))(((.(((....(((........))).))))))........))........................... ( -14.40, z-score = -0.93, R) >droEre2.scaffold_4784 1836283 91 + 25762168 GGCACGUGCUGUUCAGACACGCAGUCUGCAAAAUCACUGCAAUGCAAUAACAUAUAAACAUAAUAUAUAAAUGACUUUGAAGACAUCAAAC ....((((((....)).))))..((((.((((.(((.(((...))).....(((((.......)))))...))).)))).))))....... ( -14.70, z-score = -0.38, R) >droYak2.chr3L 1801344 80 + 24197627 GGCACGUGCUGUUCAGACACGCAGUCUACAAGAUCAGUGCAUUGCAGUA-------AAAAUAAAAUAUAAAUGAC----AUGACAUCAAAC .(((.(..(((.((((((.....))))....)).)))..)..)))....-------...................----............ ( -13.20, z-score = 0.16, R) >droSec1.super_2 1874329 84 + 7591821 GGCACGUGCUGUUCAGACACGCAGUCUACAAAAUAACUGCAAUGUGAGGUAACUUAAUCUUAACACAUAAAUAAAACAAAAACC------- .....(((((....)).)))(((((..........))))).(((((((((......))))...)))))................------- ( -13.50, z-score = -0.86, R) >droSim1.chr3L 1402281 84 + 22553184 GGCACGUGCUGUUCAGACACGCAGUCUACAAGAUCACUGCAAUGUGAGGCAACUUAAUCUUAACACAUAAAUAAAACAAAAACC------- .....(((.((((.(((...(((((..........)))))....((((....)))).))).)))))))................------- ( -15.70, z-score = -1.22, R) >consensus GGCACGUGCUGUUCAGACACGCAGUCUACAAAAUCACUGCAAUGUGAGGUAACUUAAUCAUAACAUAUAAAUAAAACAAAAAACA__AA_C .(((.(((((....)).)))(((((..........)))))..))).............................................. ( -8.92 = -8.92 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:37 2011