| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,818,696 – 1,818,754 |
| Length | 58 |
| Max. P | 0.746398 |
| Location | 1,818,696 – 1,818,754 |
|---|---|
| Length | 58 |
| Sequences | 6 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 60.55 |
| Shannon entropy | 0.71631 |
| G+C content | 0.55401 |
| Mean single sequence MFE | -13.96 |
| Consensus MFE | -7.96 |
| Energy contribution | -7.72 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.57 |
| Mean z-score | -0.27 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.746398 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1818696 58 + 24543557 ---AGUACCUC-GGUACGCCCGCUGGCGGCUG---CUGCUCAUUACCAUUACGAUCGCCAGAUCA ---........-((((((((....))))((..---..))....)))).....((((....)))). ( -16.00, z-score = -0.40, R) >droSim1.chr3L 1374805 58 + 22553184 ---AGCACCUC-GGUACGCCCACGGGCGGCUG---CUGCUCAUUACCAUUACGAUCGCCAGAUCA ---((((...(-(((.((((....))))))))---.))))............((((....)))). ( -18.40, z-score = -1.41, R) >droSec1.super_2 1844536 58 + 7591821 ---AGUACCUC-GGUACGCCCACGGGUGGCUG---CUGCUCAUUACCAUUACGAUAGCCAGAUCA ---.((((...-.))))(((....)))(((((---.((.............)).)))))...... ( -14.02, z-score = 0.18, R) >droAna3.scaffold_13337 22273721 53 - 23293914 ---AGAAUUUUUGGUACGCCCGCGGGCGGCUG---CUGCUCAUUACCA----GAUCGC--GAUCA ---......(((((((((((....))))((..---..))....)))))----))....--..... ( -15.90, z-score = -0.41, R) >droWil1.scaffold_180955 525048 58 - 2875958 AGAAUUUUUUGUGGCACGCCUUCAUCUGCCCG---CCG--CAUUACCGCA--GAGUACAAAAUCG .........((((((..((........))..)---)))--))........--............. ( -9.80, z-score = -0.05, R) >droVir3.scaffold_13049 21147367 60 - 25233164 -----UAUUGUUGGCUCUUGUGGUUAGAAUUGAACCCGCCCCCAGCCGCCUUAAUCGCCAGAUCA -----.....(((((....((((((.(..............).)))))).......))))).... ( -9.64, z-score = 0.45, R) >consensus ___AGUACCUC_GGUACGCCCGCGGGCGGCUG___CUGCUCAUUACCAUUACGAUCGCCAGAUCA ............((((((((....))))((.......))....)))).....((((....)))). ( -7.96 = -7.72 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:36 2011