| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,150,846 – 4,150,957 |
| Length | 111 |
| Max. P | 0.558066 |
| Location | 4,150,846 – 4,150,957 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 65.23 |
| Shannon entropy | 0.57715 |
| G+C content | 0.37370 |
| Mean single sequence MFE | -16.73 |
| Consensus MFE | -7.32 |
| Energy contribution | -8.36 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.558066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4150846 111 - 23011544 UCUUAAUAACGUUAUAAAUAUCUUUCCAUAUCGAAACGAUUUUUGCAUCCAUUUCCUUAUUGAAAUGACUAACAUCUGGGAAAUCAUCGGAAAAGCACUCUUCAUCCGACG (((((.....((((((((.(((((((......)))).))).))))....((((((......))))))..))))...))))).....(((((.(((....)))..))))).. ( -14.70, z-score = -0.19, R) >droSim1.chr2L 4106318 93 - 22036055 CUUUAAUAACGUUAUGAAUAUCUUUCCAUAUCGAAACGAUUUUUGCUUCCAUAUCCUUGUU------------------GAAAUCAUCGGAAGAGCACUCUUCUUCCGACG .........((.((((..........)))).))....((((((.((............)).------------------)))))).(((((((((.....))))))))).. ( -18.60, z-score = -2.44, R) >droSec1.super_5 2249298 93 - 5866729 CUUUAAUAACUUUAUGAAUAUCUUUCCAUAUCGAAACGAUUUUUGCUUCCAUAUCCUUGUU------------------GAAAUCAUCGGAAGAGCACUCUUCUUCCGACG .((((((((...((((((.(((((((......)))).))).))......))))...)))))------------------)))....(((((((((.....))))))))).. ( -17.00, z-score = -2.34, R) >droYak2.chr2L 4175893 102 - 22324452 UUUUAAGAUUUCUUUGCAAAUCCUCCAAUAUACAUGUGAGUUUCUGUCCUAUAUCCCCAACAGCAGAGUC---------AGACUCAUCGGAAGAGUACUCUUCUUCCGACG ......(((((......)))))..............(((((((((((...............)))))...---------.))))))(((((((((.....))))))))).. ( -20.66, z-score = -1.71, R) >droEre2.scaffold_4929 4215589 99 - 26641161 UUUUAAGAUUUUUUUGAAAAUUGUCCAACACACAUGCGAGGUUUUGUCUCAAAUCCCCAACAUCAGAGUU---------A---UCAUCGCAAGAACACUCUUCAACCGCGG ((((((((...))))))))...............((((.((.((((...)))).))........(((((.---------.---...((....))..))))).....)))). ( -12.70, z-score = 0.51, R) >consensus UUUUAAUAACUUUAUGAAUAUCUUUCCAUAUCGAAACGAUUUUUGCUUCCAUAUCCUUAUU___A______________GAAAUCAUCGGAAGAGCACUCUUCUUCCGACG .....................................((((((....................................)))))).(((((((((.....))))))))).. ( -7.32 = -8.36 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:29 2011