| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,781,212 – 1,781,332 |
| Length | 120 |
| Max. P | 0.953124 |
| Location | 1,781,212 – 1,781,332 |
|---|---|
| Length | 120 |
| Sequences | 15 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.02 |
| Shannon entropy | 0.23904 |
| G+C content | 0.47333 |
| Mean single sequence MFE | -38.86 |
| Consensus MFE | -30.08 |
| Energy contribution | -30.19 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.953124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1781212 120 - 24543557 ACUUCAAGGCAUUGGCAGCACUCGACCAGAAGAUCAAGAGCUUUAAUGUUGGACCCAACCCGUACACGUGGUUCACCAUGGAAGCUCUUGAGGAGACCUGGCGUAAUCUGCAAAAGAUCA ..............((((....((.((((....(((((((((((...((((....)))).......(((((....))))))))))))))))(....)))))))....))))......... ( -40.70, z-score = -2.64, R) >anoGam1.chr2L 12665437 120 + 48795086 ACUUCCAGGCGCUGGCCGCGCUCGACCAGAAGAUCAAGAGCUUCAACGUCGGCCCGAACCCGUACACCUGGUUCACGAUGGAGGCGCUGGAGGAUACGUGGCGCAAUCUGCAGAAGAUCA .(((((((.((((..((((((.((((..((((........))))...))))))..(((((.(.....).)))))..).))).))))))))))).........((.....))......... ( -38.50, z-score = 0.78, R) >droGri2.scaffold_15110 413558 120 - 24565398 ACUUUAAGGCAUUGGCAGCACUCGACCAGAAGAUCAAGAGCUUUAAUGUUGGACCCAAUCCAUACACAUGGUUCACCAUGGAAGCUCUUGAGGAGACCUGGCGUAACUUGCAAAAGAUCA .((((...((....)).(((..((.((((....(((((((((((..(((((((.....)))).)))(((((....))))))))))))))))(....))))))).....))).)))).... ( -40.10, z-score = -3.38, R) >droVir3.scaffold_10322 371302 120 + 456481 ACUUUAAGGCAUUGGCAGCGCUCGACCAGAAGAUCAAGAGCUUUAAUGUUGGACCAAAUCCGUACACCUGGUUCACCAUGGAAGCUCUUGAGGAGACCUGGCGUAAUCUGCAAAAGAUCA ..............((((....((.((((....(((((((((((.(((.(((((((............))))))).))).)))))))))))(....)))))))....))))......... ( -41.80, z-score = -3.12, R) >droMoj3.scaffold_6680 22621536 120 + 24764193 ACUUUAAGGCAUUGGCAGCACUCGACCAGAAGAUCAAGAGCUUUAAUGUUGGACCGAAUCCGUACACCUGGUUCACCAUGGAAGCUCUUGAGGAGACCUGGCGUAAUCUGCAAAAGAUCA ..............((((....((.((((....(((((((((((.(((.(((((((............))))))).))).)))))))))))(....)))))))....))))......... ( -41.10, z-score = -3.04, R) >droWil1.scaffold_180727 1498510 120 + 2741493 ACUUUAAGGCAUUGGCAGCACUCGACCAGAAGAUCAAGAGCUUUAAUGUUGGACCGAAUCCAUACACAUGGUUCACCAUGGAAGCUCUUGAGGAGACCUGGCGUAAUCUGCAAAAGAUCA ..............((((....((.((((....(((((((((((..(((((((.....)))).)))(((((....))))))))))))))))(....)))))))....))))......... ( -41.80, z-score = -3.74, R) >droPer1.super_32 33266 120 + 992631 ACUUUAAGGCAUUGGCAGCACUCGACCAGAAGAUCAAGAGCUUUAAUGUUGGACCGAAUCCAUACACUUGGUUCACCAUGGAAGCUCUUGAGGAGACCUGGCGUAAUCUGCAAAAGAUCA ..............((((....((.((((....(((((((((((.(((.((((((((..........)))))))).))).)))))))))))(....)))))))....))))......... ( -42.60, z-score = -3.85, R) >dp4.chrXR_group8 522562 120 - 9212921 ACUUUAAGGCAUUGGCAGCACUCGACCAGAAGAUCAAGAGCUUUAAUGUUGGACCGAAUCCAUACACUUGGUUCACCAUGGAAGCUCUUGAGGAGACCUGGCGUAAUCUGCAAAAGAUCA ..............((((....((.((((....(((((((((((.(((.((((((((..........)))))))).))).)))))))))))(....)))))))....))))......... ( -42.60, z-score = -3.85, R) >droAna3.scaffold_13337 22237654 120 + 23293914 AUUUCAAGGCAUUGGCAGCACUCGACCAGAAGAUCAAGAGCUUUAAUGUUGGACCCAAUCCCUACACCUGGUUCACCAUGGAAGCUCUUGAGGAGACCUGGCGUAACCUGCAAAAGAUCA ..............((((....((.((((....(((((((((((.(((.((((((..............)))))).))).)))))))))))(....)))))))....))))......... ( -39.84, z-score = -2.65, R) >droEre2.scaffold_4784 1765913 120 - 25762168 ACUUCAAGGCAUUGGCAGCACUCGACCAGAAGAUCAAGAGCUUUAAUGUUGGACCCAACCCCUACACGUGGUUCACCAUGGAAGCUCUUGAGGAGACCUGGCGUAAUCUGCAAAAGAUCA ..............((((....((.((((....(((((((((((...((((....)))).......(((((....))))))))))))))))(....)))))))....))))......... ( -40.70, z-score = -2.71, R) >droYak2.chr3L 1733611 120 - 24197627 ACUUCAAGGCAUUGGCAGCACUCGACCAGAAGAUCAAGAGCUUUAAUGUUGGACCCAACCCCUACACGUGGUUCACCAUGGAAGCUCUUGAGGAGACCUGGCGUAAUCUGCAAAAGAUCA ..............((((....((.((((....(((((((((((...((((....)))).......(((((....))))))))))))))))(....)))))))....))))......... ( -40.70, z-score = -2.71, R) >droSec1.super_2 1807411 120 - 7591821 ACUUCAAGGCAUUGGCAGCACUCGACCAGAAGAUCAAGAGCUUUAAUGUUGGACCCAACCCCUACACGUGGUUCACCAUGGAAGCUCUUGAGGAGACCUGGCGUAAUCUGCAAAAGAUCA ..............((((....((.((((....(((((((((((...((((....)))).......(((((....))))))))))))))))(....)))))))....))))......... ( -40.70, z-score = -2.71, R) >droSim1.chr3L 1337631 120 - 22553184 ACUUCAAGGCAUUGGCAGCACUCGACCAGAAGAUCAAGAGCUUUAAUGUUGGACCCAACCCCUACACGUGGUUCACCAUGGAAGCUCUUGAGGAGACCUGGCGUAAUCUGCAAAAGAUCA ..............((((....((.((((....(((((((((((...((((....)))).......(((((....))))))))))))))))(....)))))))....))))......... ( -40.70, z-score = -2.71, R) >apiMel3.Group3 1562834 120 + 12341916 AUUUUGAAGCUUUGGCAGCUCUUGAUAGGCAAAUCAAAAGUUUCAAUGUUGGUCCUAAUCCAUACACAUGGUUCACAAUGGAAGCUCUAGAAGAUACUUGGCGCAAUUUGCAAAAAAUAA .(((((.((((((((.((((.(((((......))))).))))))...((((........((((....))))....)))).)))))).)))))..........((.....))......... ( -19.00, z-score = 1.89, R) >triCas2.ChLG2 749177 120 - 12900155 AUUUUGAGGCUUUGGCAGCUUUGGAUCAACAGAUCAAGAGUUUCAAUGUUGGACCGAAUCCCUACACUUGGUUUAAUAUGGAAGCUUUGGAAGAAACGUGGAGGAACUUGCAGAAAAUCA .((((((((((((.((..((((.((((....)))).((((((((.((((((((((((..........)))))))))))).)))))))).))))....)).))))..))).)))))..... ( -32.00, z-score = -1.06, R) >consensus ACUUUAAGGCAUUGGCAGCACUCGACCAGAAGAUCAAGAGCUUUAAUGUUGGACCCAAUCCCUACACGUGGUUCACCAUGGAAGCUCUUGAGGAGACCUGGCGUAAUCUGCAAAAGAUCA ..............((((....((.((((....((.((((((((.(((.((((((..............)))))).))).)))))))).))(....)))))))....))))......... (-30.08 = -30.19 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:30 2011