| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,756,213 – 1,756,315 |
| Length | 102 |
| Max. P | 0.539357 |
| Location | 1,756,213 – 1,756,315 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 66.11 |
| Shannon entropy | 0.64802 |
| G+C content | 0.49769 |
| Mean single sequence MFE | -27.00 |
| Consensus MFE | -11.59 |
| Energy contribution | -12.37 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.41 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.539357 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1756213 102 + 24543557 AGGCGUAAGCAGGAUUAUA------CUCCAUCCACAGACUUUCAAACUGGCCGAUAAGUCGCGCCAAAGCUAUCGGUCAAUCGGGCUUUUGCGCGUGAGGCAAGUGCC ..((....)).((((....------....))))..............(((((((((....((......)))))))))))....(((.(((((.(....)))))).))) ( -31.70, z-score = -0.89, R) >droEre2.scaffold_4784 1740851 89 + 25762168 AGGGGUUAGGUAAGUGUAA-------------------CUUUCAAACUAACCGAUAAGUCGCGCCGAAGCUAUCGGUCUAUCGGGCUUUUGCGCGUGAGGCACGGGCC ...((((((..(((.....-------------------))).....))))))((((..(((.((....))...)))..)))).((((..(((.(....))))..)))) ( -27.50, z-score = -0.25, R) >droYak2.chr3L 1708612 108 + 24197627 AGGCUUAAGGUAAAUGUAAAUUAUACUCCGCUCACAGACUUUCAAACUGGCCGAUAAGUCGCGCCAAAGCUAUCGGUCUAUCGGGCUUUUGCGCGUGAGGCACGGGCC .(((((..((...(((.....)))...))((((((.(((((((.........)).)))))((((.((((((..(((....))))))))).)))))))).))..))))) ( -32.90, z-score = -0.80, R) >droSec1.super_2 1781994 98 + 7591821 ---CACAAAUCAAAUAUAC-------UCCAUCCACAGACUUUCAAACUGACCGAUAAGUCGCGCCACAGCUAUCGGUCAAUCGGGAUUUUGCGCGUGAGGCACGUGCC ---................-------...((((...(.....)....(((((((((....((......)))))))))))....))))...(((((((...))))))). ( -25.00, z-score = -1.43, R) >droSim1.chr3L 1310636 98 + 22553184 ---CACAAAUCAAAUAUAC-------UCCAUCCACAGACUUUCAAACUGACCGAUAAGUCGCGCCACAGUUAUCGGUCAAUCGGGAUUUUGCGCGUGAGGCACGUGCC ---................-------...((((...(.....)....((((((((((.(........).))))))))))....))))...(((((((...))))))). ( -24.70, z-score = -1.37, R) >droMoj3.scaffold_6680 22594885 98 - 24764193 CAGAACAAUACAAAUAAAGUUGU--CGUUGUCGAUUAAUUCUUAGACCGACUACUUACGCAUCCCUGAGCUAUCGU-------AGUUCUUG-GUGUUGGCCAUUUCCC ..(..((((((.....((((.((--((..(((............))))))).))))..........((((((...)-------)))))...-))))))..)....... ( -20.20, z-score = -0.99, R) >consensus AGGCACAAGGCAAAUAUAA_______UCCAUCCACAGACUUUCAAACUGACCGAUAAGUCGCGCCAAAGCUAUCGGUCAAUCGGGCUUUUGCGCGUGAGGCACGUGCC ...........................................................(((((.((((((..(((....))))))))).)))))...(((....))) (-11.59 = -12.37 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:27 2011