| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,749,742 – 1,749,862 |
| Length | 120 |
| Max. P | 0.771953 |
| Location | 1,749,742 – 1,749,862 |
|---|---|
| Length | 120 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.04 |
| Shannon entropy | 0.45027 |
| G+C content | 0.58958 |
| Mean single sequence MFE | -43.57 |
| Consensus MFE | -23.68 |
| Energy contribution | -23.45 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771953 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1749742 120 + 24543557 CCUCUCGGACUGCGGCGUUGUCCAUGGAUCCCUCUAUUCCUGCCUGAGAGCUAUCUUCGGCCUGUCCGUGGCCGGAGUGCUCAUCGCCGUCUUCAGCUGCAUGUUGGUGUACCAGCUACU .......((..((((((........(((.........))).......((((...((((((((.......)))))))).))))..))))))..))........(((((....))))).... ( -41.50, z-score = -0.98, R) >droPer1.super_29 765428 120 - 1099123 UCUCUCCGAUUGCGGCGUUGUCCAUGGAUCGCUGUACUCCUGCCUGCGGGCCAUCUUCGGGCUGUCUGUGGCCGGAGUACUCAUCGCCGUCUUCAGCUGCAUGCUGGUCUACCAGCUGCU .......((..(((((((.(((....))).)).(((((((.(((.((((((..((....))..))))))))).))))))).....)))))..))....(((.(((((....)))))))). ( -55.10, z-score = -4.05, R) >droAna3.scaffold_13337 22206403 120 - 23293914 CCUCUCCGAUUGCAACGUUGUCCACGGAUCCCUCUACUCGUGCCUCAGAGCCAUCUUUGGCUUAUCCGUGGCAGGAGUUCUUAUCGCAGUCUUUAGCUGCAUGCUGGUCUACCAGCUCCU ....((((...(((....)))...)))).......((((.((((.(.((((((....))))))....).)))).)))).......(((((.....)))))..(((((....))))).... ( -40.30, z-score = -2.92, R) >droEre2.scaffold_4784 1734374 120 + 25762168 CCUUUCGGACUGCGGCGUUGUCCACGGAUCCCUGUACUCCUGCCUGAGAGCCAUCUUCGGCCUGUCCGUGGCUGGAGUUCUCAUCGCCGUCUUCAGCUGCAUGCUGGUGUACCAGCUCCU ......(((.((((((..((...((((........(((((.(((.((.((((......)).)).))...))).)))))........))))...)))))))).(((((....)))))))). ( -44.69, z-score = -1.69, R) >droYak2.chr3L 1702118 120 + 24197627 CCUCUCGGACUGCGGCGUUGUCCACGGAUCCCUGUACUCCUGCCUGAGAGCCAUCUUCGGCCUGUCCGUGGCCGGAGUUCUCAUCGCCGUCUUCAGCUGCAUGCUGGUGUACCAGCUCCU ......(((.((((((..((...((((........(((((.(((.((.((((......)).)).))...))).)))))........))))...)))))))).(((((....)))))))). ( -44.69, z-score = -1.48, R) >droSec1.super_2 1775627 120 + 7591821 CCUCUCGGACUGCGGCGUUGUCCAUGGAUCCCUGUACUCCUGCCUGAGAGCUAUCUUCGGCCUGUCCGUGGCCGGAGUGCUCAUCGCUGUCUUCAGCUGCAUGUUGGUGUACCAGCUCCU ......(((.(((((.(..(((....))).)))))).)))(((..((((((...((((((((.......)))))))).)))).))((((....)))).))).(((((....))))).... ( -45.40, z-score = -1.87, R) >apiMel3.Group13 1306707 120 + 8929068 UACGCCCCACUGCGAGGCGGUGCACGGCGCCCUGCACGCCUGCCUCAGGGCCCUGUUCGGCGUCUCGGUGGCCGGUAUCCUCGCCUGCAUAUUUUCCUGCAUGCUCGUCUACCAACUGUU ......((((..(((((((.((.((((.((((((...(....)..)))))).)))).)).)))))))))))..((((..(..((.((((........)))).))..)..))))....... ( -45.40, z-score = -0.57, R) >triCas2.ChLG7 4600033 120 + 17478683 CACUCCCGACUGUGAAGUGAUCCACGGCGCCCUUUAUUCGUGUCUAAGGGCCAUGUUUGGACUAUCAGUUAGCGGGAUCUUGGUCUGCAUUUUCUCGUGUAUGUUGGUUUACCAGCUGUU ...(((((.(((....(((.((((.(((((((((...........))))))...))))))).)))....))))))))........(((((......))))).(((((....))))).... ( -31.50, z-score = 0.30, R) >consensus CCUCUCCGACUGCGGCGUUGUCCACGGAUCCCUGUACUCCUGCCUGAGAGCCAUCUUCGGCCUGUCCGUGGCCGGAGUUCUCAUCGCCGUCUUCAGCUGCAUGCUGGUGUACCAGCUCCU ..........((((..((((...((((........(((((.(((...(((((......)))...))...))).)))))........))))...)))))))).(((((....))))).... (-23.68 = -23.45 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:26 2011