| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,742,466 – 1,742,564 |
| Length | 98 |
| Max. P | 0.579856 |
| Location | 1,742,466 – 1,742,564 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.10 |
| Shannon entropy | 0.55932 |
| G+C content | 0.46977 |
| Mean single sequence MFE | -23.85 |
| Consensus MFE | -12.93 |
| Energy contribution | -13.15 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.31 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579856 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1742466 98 + 24543557 ---------------------AGCCAAAUCGAAUUAAAUCGAAUGGAUGUAGUCACCCAGUGCACUCGGUCAUUAGGCUCUUAUCUCCGUUCCGAGCACUUGACCUUGUCGCAGGGAUC- ---------------------..(((..((((......)))).))).........(((.(((.((..(((((....((((.............))))...)))))..))))).)))...- ( -27.12, z-score = -1.22, R) >droEre2.scaffold_4784 1725628 97 + 25762168 --------------------ACGCAAAAUCUAAACAAAUCGAA--GAUGUAGUCACCCAGUGCACUCGGUCAUUAAGCUCUUAUCUCCGUUCCGGGCACUUGACCUUGUCGCAGGGAUC- --------------------..((...((((...........)--)))...))..(((.(((.((..(((((....((((.............))))...)))))..))))).)))...- ( -20.52, z-score = -0.06, R) >droYak2.chr3L 1694527 99 + 24197627 --------------------GCGCAGAAUCUAAACAAAUCGAAUAGAUGUAGUCACCCAGUGCACUCGGUCAUUAGGCUCUUAUCACCGUUCCGAGCACUUGACCUUGUCGCAGGGAUC- --------------------..((...(((((..(.....)..)))))...))..(((.(((.((..(((((....((((.............))))...)))))..))))).)))...- ( -23.72, z-score = -0.45, R) >droSec1.super_2 1768427 98 + 7591821 ---------------------AGCCAAAUCGAAUUAAAUCGAAUGGAUGUAGUCACCCAGUGCACUCGGUCAUUAGGCUCUUAUCUCCGUUCCGAGUACUUGACCUUGUCGCAGGGAUC- ---------------------..(((..((((......)))).))).........(((.(((.((..(((((....((((.............))))...)))))..))))).)))...- ( -25.52, z-score = -0.88, R) >droSim1.chr3L 1296966 98 + 22553184 ---------------------AGCCAAAUCGAAUUAAAUCGAAUGGAUGUAGUCACCCAGUGCACUCGGUCAUUAGGCUCUUAUCUCCGUUCCGAGUACUUGACCUUGUCGCAGGGAUC- ---------------------..(((..((((......)))).))).........(((.(((.((..(((((....((((.............))))...)))))..))))).)))...- ( -25.52, z-score = -0.88, R) >droAna3.scaffold_13337 22196297 91 - 23293914 -------------------------GCGCCCUAACAAUG-AAAUCUGUACAAU-AUGUAGUACACUCGGUCAUUAGGG-CUUAUCUCCAAGCCUAGCACUUGACCUUGUCGCAGGGUCC- -------------------------..(((((.((((..-.....(((((...-.....)))))...(((((...(((-(((......))))))......)))))))))...)))))..- ( -25.20, z-score = -1.77, R) >dp4.chrXR_group8 5104266 117 - 9212921 AACCCCUGUACCCUCUGUCUAUAUAAUAUAUUGUAUAUAUGUAUAGAGUUAAUCAUUCAGUGCACUCAAUCAUCGCGCUGUUAUCUCC---CUAAGCACUUGACCUUGUCGCCGGGACCU ............((((((.((((((..........)))))).)))))).........((((((...........)))))).....(((---(...((((........)).)).))))... ( -21.60, z-score = -1.01, R) >droPer1.super_29 757835 117 - 1099123 AACCCCUGUACCCUCUGUCUAUGUAAUAUAUUGUAUAUAUGUAUAGAGUUAAUCAUUCAGUGCACUCAAUCAUCGCGCUGUUAUCUCC---CUAAGCACUUGACCUUGUCGCCGGGACCU ............((((((.((((((..........)))))).)))))).........((((((...........)))))).....(((---(...((((........)).)).))))... ( -21.60, z-score = -0.74, R) >consensus _____________________AGCAAAAUCUAAUCAAAUCGAAUAGAUGUAGUCACCCAGUGCACUCGGUCAUUAGGCUCUUAUCUCCGUUCCGAGCACUUGACCUUGUCGCAGGGAUC_ .......................................................(((.(((.((..(((((....(((...............)))...)))))..))))).))).... (-12.93 = -13.15 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:24 2011