| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,738,588 – 1,738,651 |
| Length | 63 |
| Max. P | 0.866043 |
| Location | 1,738,588 – 1,738,651 |
|---|---|
| Length | 63 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 83.58 |
| Shannon entropy | 0.31552 |
| G+C content | 0.40342 |
| Mean single sequence MFE | -13.79 |
| Consensus MFE | -8.41 |
| Energy contribution | -9.08 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1738588 63 - 24543557 UGGAUAAACAACAUUUUAUGGACUUUUUUGCGGUUUUAUCA-CUUUGCGACCGCAGACGAGCCU ...................((.(((.(((((((((.((...-...)).))))))))).))))). ( -17.40, z-score = -3.73, R) >droAna3.scaffold_13337 22192986 64 + 23293914 AGGAUUAACACCAUUUUUAUCGCGUUUAUGGUUAUUUAUUAUCAGCUCUUUGACAGACGAGCCU .........(((((.............)))))............((((.((....)).)))).. ( -6.92, z-score = 0.45, R) >droEre2.scaffold_4784 1722093 61 - 25762168 UGGAUAAACAACAUUUUAUUGACUUUUUUGCGCUUUUAUCA-C--UGCGGCCGCAGACGAGCCU ..((((((......))))))..(((.((((((((.......-.--...)).)))))).)))... ( -8.50, z-score = 0.30, R) >droYak2.chr3L 1690726 63 - 24197627 UGGAUAAACAACAUUUUAUUGACUUUUUUGCGGUUUUAUCA-CUUUGCGACCGCAGACGAGCCU ..((((((......))))))..(((.(((((((((.((...-...)).))))))))).)))... ( -15.10, z-score = -3.16, R) >droSec1.super_2 1764761 63 - 7591821 UGCAUAAACAACAUUUUAUGGACUUUUUUGCGGUUUUAUCA-CUUUGCGACCGCAGACGAGCCU ...................((.(((.(((((((((.((...-...)).))))))))).))))). ( -17.40, z-score = -3.71, R) >droSim1.chr3L 1293316 63 - 22553184 UGCAUAAACAACAUUUUUUGGACUUUUUUGCGGUUUUAUCA-CUUUGCGACCGCAGACGAGCCU ...................((.(((.(((((((((.((...-...)).))))))))).))))). ( -17.40, z-score = -3.66, R) >consensus UGGAUAAACAACAUUUUAUGGACUUUUUUGCGGUUUUAUCA_CUUUGCGACCGCAGACGAGCCU ......................(((.(((((((((.((.......)).))))))))).)))... ( -8.41 = -9.08 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:22 2011