| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,726,928 – 1,727,035 |
| Length | 107 |
| Max. P | 0.860244 |
| Location | 1,726,928 – 1,727,035 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 82.22 |
| Shannon entropy | 0.31771 |
| G+C content | 0.50280 |
| Mean single sequence MFE | -38.30 |
| Consensus MFE | -19.42 |
| Energy contribution | -20.62 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.860244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1726928 107 - 24543557 CAGUGAACCUCAUCGCUGUUGUAAUGGAUGAG-AAUGACUGCGGCGGUCUUAUCAUCCACCCUUAUCACUUGUAAAAUCUUGAGCAAAGUCGAGGGGUAUGCCAAAUG ((((((......))))))..(((..((((((.-...(((((...)))))...))))))((((((...((((((..........)).))))..)))))).)))...... ( -29.50, z-score = -1.22, R) >droEre2.scaffold_4784 1710217 107 - 25762168 CAGUGAACCUAAUCGCUGUUGGGAUGGAGGGGUAAUGCCUGCGGUUCACUUAUCGCCUGGCGUUAUCACUUGUAAUCCCUUGAUAACGAUUGAAGGAC-UGCAAAGGG ((((...((((((((.(((((((((.(((.(((((((((.(((((......)))))..))))))))).)))...)))))..)))).)))))..)))))-))....... ( -38.30, z-score = -2.82, R) >droYak2.chr3L 1678931 107 - 24197627 CAGUGAACCGAGUCGCUGUUGGGAUGAAGGGUGAAUGCCUGGGUUGUUCUUAUCGCCCGGCGUUAUCACUUGUAAUCUCGUGAGCAAAGUCGAGGGGU-UGCUAAGUG ((((((......))))))..(((((...(((((((((((.((((.((....)).)))))))))..))))))...)))))...(((((..(....)..)-))))..... ( -35.60, z-score = -1.51, R) >droSec1.super_2 1753284 107 - 7591821 CAGUGAUCCUAAUCGCUGUUGGGUUGGAGGGGAAAUGCCUGCGGCGUUCUUAUCAUCCGCCCUUAUCACUUGUAAUCUCUUGAGCAAAGUCGAGGGGU-UGCCAAGUG (((((((....)))))))..((((.(((.(((((.((((...)))))))))....)))))))....(((((((((((((((((......)))))))))-)).)))))) ( -42.40, z-score = -3.47, R) >droSim1.chr3L 1285769 107 - 22553184 CAGUGAACCUAAUCGCUGUUGGGUUGGAGGGGGAAUGCCUGCGGCGUUCUUAUCAUCCGCCCUUAUCACUUGUAAUCUCUUGAGCAAAGUCGAGGGGU-UGCCAAGUG ((((((......))))))..((((.(((..(((((((((...)))))))))....)))))))....(((((((((((((((((......)))))))))-)).)))))) ( -45.70, z-score = -4.04, R) >consensus CAGUGAACCUAAUCGCUGUUGGGAUGGAGGGGGAAUGCCUGCGGCGUUCUUAUCAUCCGCCCUUAUCACUUGUAAUCUCUUGAGCAAAGUCGAGGGGU_UGCCAAGUG ((((((......)))))).((((.(((..((..((((((...))))))))..))))))).......(((((((((((((((((......))))))))).))).))))) (-19.42 = -20.62 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:19 2011