| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,723,428 – 1,723,512 |
| Length | 84 |
| Max. P | 0.975617 |
| Location | 1,723,428 – 1,723,512 |
|---|---|
| Length | 84 |
| Sequences | 5 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 80.17 |
| Shannon entropy | 0.34438 |
| G+C content | 0.47618 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -11.23 |
| Energy contribution | -12.47 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.46 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.975617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1723428 84 - 24543557 GGCUUAUCCCAGAAACGGCGGUUUUUCAA--UUUUGAAACUUCAAGUUCACGAUAUCCCCGGAUUGCCUGCGAUGAGCCGAGCCCC ((((((((.(((...(((.((....((..--.(((((....))))).....))...)))))......))).))))))))....... ( -23.50, z-score = -1.62, R) >droSim1.chr3L 1282261 83 - 22553184 GGCUUAUCCCAGAAACAG-GGGUUUUGAA--UUUUGAAACUUCAAGUUCAUAAUAUUCCCGUAUUGCCUGCGAUGAGCCGAGCCCC ((((((((.(((.((..(-(((...((((--(((.((....)))))))))......))))...))..))).))))))))....... ( -25.50, z-score = -2.98, R) >droSec1.super_2 1749802 83 - 7591821 GGCUUAUCCCAGAAAUAG-GGGUUUUGAA--UUUUGAAACUUCAAGUUCAUAAUAUUCCCGGAUUUCCUGCGAUGAGCCGAGCCCC ((((((((.(((((((.(-(((...((((--(((.((....)))))))))......))))..)))).))).))))))))....... ( -28.20, z-score = -3.42, R) >droYak2.chr3L 1675425 86 - 24197627 GGCUCAUCCGACAAUCCGGGGUUUUUAUAUUUUUUUAAACUGCAACUUUAAGAUAUUCCCGGACUGCCUGUGAUGAGCCGAACCCC ((((((((((.((.(((((((.(((((.....................)))))...))))))).))..)).))))))))....... ( -28.70, z-score = -4.37, R) >droEre2.scaffold_4784 1706501 84 - 25762168 GGCUCAUCCUACAGUCCGGCGUCUUUAUA--UUUUUAAAGUGCAAGCUUACGAUACUCCCGGACUGCCUGGAAUGAGCCGAACCCC (((((((((..((((((((((.(((((..--....))))))))........(.....).)))))))...)).)))))))....... ( -31.60, z-score = -4.90, R) >consensus GGCUUAUCCCAGAAACAG_GGUUUUUAAA__UUUUGAAACUUCAAGUUCACGAUAUUCCCGGAUUGCCUGCGAUGAGCCGAGCCCC ((((((((.(((.......((...........((((......))))...........))........))).))))))))....... (-11.23 = -12.47 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:18 2011