| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,698,070 – 1,698,168 |
| Length | 98 |
| Max. P | 0.868221 |
| Location | 1,698,070 – 1,698,168 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 76.24 |
| Shannon entropy | 0.43461 |
| G+C content | 0.56605 |
| Mean single sequence MFE | -28.24 |
| Consensus MFE | -17.04 |
| Energy contribution | -17.88 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.868221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1698070 98 - 24543557 GAGCGAUGCUCCUGCUCCUGC------UCCUGCCACCGUU---UCUCCGGCUCCUCUUGUUUUCCGUGUGGCCAGCACUUUGGCCCACACGAUUACACGCAAGCUUA (((((..((....))...)))------)).(((..(((..---....))).......(((..((.((((((((((....)))).))))))))..))).)))...... ( -29.00, z-score = -2.14, R) >droSim1.chr3L 1259128 107 - 22553184 GAGCGAUGCUCCUGCUCCUGCUACCGUUUCUGCUACUGUUCCAUCUCCGGCUCCUCUUGUUGUCCGUGUGGCCAGCACUUUGGCCCACACGAUUACACGCAAGCUUA ((((((.((....)))).((..((.((.......)).))..))......))))..((((((((.(((((((((((....)))).)))))))...))).))))).... ( -27.90, z-score = -0.97, R) >droSec1.super_2 1724409 107 - 7591821 GAGCGAUGCUCCUGCUCCUGCUACCGUUUCUGCUACUGUUCCAUCUCCGACUCCUCUUGUUGUCCGUGUGGCCAGCACUUUGGCCCACACGAUUACACGCAAGCUUA ((((((.((....((....))....)).))(((...............(((..(....)..)))(((((((((((....)))).))))))).......))).)))). ( -27.90, z-score = -1.64, R) >droYak2.chr3L 1649836 104 - 24197627 GAGCGAUGCUCCUCCUGCUCCUCC---CACUGCUACUGUUCCAUCUCCGGCUCCUCUUGUUGUCCGUGUGGCCAGCACUUUGGCCCACACGAUUACACGCAAGCUUA ((((((((........((......---....))........))))....))))..((((((((.(((((((((((....)))).)))))))...))).))))).... ( -27.59, z-score = -1.67, R) >droAna3.scaffold_13337 22153171 84 + 23293914 -----------------------GAGCGAAUGCUCCUUUUGCUCCUUUGGCCGCUCUUGUUGUUUGUGGGGCCCGCACUUUGCCCCACACGUUUACACGCAAGGUCU -----------------------(((((((.......)))))))....((((...(.(((....((((((((.........)))))))).....))).)...)))). ( -28.80, z-score = -2.04, R) >consensus GAGCGAUGCUCCUGCUCCUGCU_C_G_UACUGCUACUGUUCCAUCUCCGGCUCCUCUUGUUGUCCGUGUGGCCAGCACUUUGGCCCACACGAUUACACGCAAGCUUA ((((...))))............................................((((((((.(((((((((((....)))).)))))))...))).))))).... (-17.04 = -17.88 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:16 2011