| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,686,752 – 1,686,808 |
| Length | 56 |
| Max. P | 0.777895 |
| Location | 1,686,752 – 1,686,808 |
|---|---|
| Length | 56 |
| Sequences | 7 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 83.25 |
| Shannon entropy | 0.30805 |
| G+C content | 0.54391 |
| Mean single sequence MFE | -16.72 |
| Consensus MFE | -11.49 |
| Energy contribution | -11.66 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777895 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1686752 56 - 24543557 ----------UGCCCCGCCAGCAUCCAUA-GAAAUGCUGGUAAUUAAGCGCUCUUCAGCGGCUCACC ----------.(((..((((((((.....-...))))))))........(((....))))))..... ( -18.10, z-score = -2.49, R) >droSim1.chr3L 1247576 56 - 22553184 ----------UGCCCCGCCAGCAUCCAUA-GAAAUGCUGGUAAUUAAGCGCUCUUCAGCGGCUCACC ----------.(((..((((((((.....-...))))))))........(((....))))))..... ( -18.10, z-score = -2.49, R) >droSec1.super_2 1713045 56 - 7591821 ----------UGCCCCGCCAGCAUCCAUA-GAAAUGCUGGUAAUUAAGCGCUCUUCAGCGGCUCACC ----------.(((..((((((((.....-...))))))))........(((....))))))..... ( -18.10, z-score = -2.49, R) >droYak2.chr3L 1638041 56 - 24197627 ----------UGCCCCGCCAGCAUCCAUA-GAAAUGCUGGUAAUUAAGCGCUCUUCAGCGGCUCACC ----------.(((..((((((((.....-...))))))))........(((....))))))..... ( -18.10, z-score = -2.49, R) >droEre2.scaffold_4784 1670015 56 - 25762168 ----------UGCCCCGCCAGCAUCCAUA-GAAAUGCUGGUAAUUAAGCGCUCUUCAGCGGCGCACC ----------(((.((((((((((.....-...))))))))........(((....))))).))).. ( -19.40, z-score = -2.38, R) >droAna3.scaffold_13337 22142241 55 + 23293914 -----------CCUCCGUCAGCAUCCAUA-GAAAUGCUGGUAAUUAAGCCCUCUCGAGCGGCUCACC -----------......(((((((.....-...)))))))......((((((....)).)))).... ( -13.10, z-score = -1.48, R) >droWil1.scaffold_180698 898462 63 - 11422946 CGCUUGGCGGUGGGGAAGAAGUUUCCAUACAAAAUGCUGGUAAUUAAGCGCUCUUCAGAUGCU---- .((((((((.((.(((((...)))))...))...)))).......))))((((....)).)).---- ( -12.11, z-score = 1.01, R) >consensus __________UGCCCCGCCAGCAUCCAUA_GAAAUGCUGGUAAUUAAGCGCUCUUCAGCGGCUCACC ...........(((..((((((((.........))))))))......((........)))))..... (-11.49 = -11.66 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:16 2011