| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,680,882 – 1,680,985 |
| Length | 103 |
| Max. P | 0.795662 |
| Location | 1,680,882 – 1,680,985 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 48.84 |
| Shannon entropy | 0.83715 |
| G+C content | 0.34078 |
| Mean single sequence MFE | -21.12 |
| Consensus MFE | -3.98 |
| Energy contribution | -5.67 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.19 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.795662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1680882 103 + 24543557 AUUUUUUGCCAAUUUUCG-CAUUUUCGGUAAGGGGUUACAUCAUCAUUUUUUGCAAAAAUUGGUCAAAUUUAAAAUUUUCCAAUUUUGAUUGCCAAUCAAUUGC ((((((((((........-.......))))))))))................((((..(((((.(((..((((((((....))))))))))))))))...)))) ( -15.76, z-score = 0.08, R) >dp4.chrXR_group3a 588127 96 + 1468910 ------GGCCGAUUUUUGGCAAUUUUAAUGAUGG-UUACAUCAUGAUUUUUGCCGAAAAUCGUGAGGACA-CGAAUGUCCUUCUUUCUAAUGCCAAUCGAUUGG ------((((((((((((((((.....((((((.-...)))))).....))))))))))))).(((((((-....))))))).........))).......... ( -37.70, z-score = -5.82, R) >droPer1.super_29 626634 97 - 1099123 ------GGCCGAUUUUUGGCAAAUUUAAUGAUGU-AACCAUCAUGAUUUUUUGCGAAAAUCGUGAAAAAAAUGUAUGUCCUUUUUUAGGCUGGCAGUCGAUUGG ------.(((((((((((.((((....((((((.-...)))))).....))))))))))))...............(.(((.....)))).))).......... ( -23.00, z-score = -1.20, R) >droMoj3.scaffold_6654 1000924 92 - 2564135 -------ACCCUUUCCUAAGCUCCUCACUUCAGCUUAAAGCAAUGUAAACUAAUCGUGUUUUCCGAAAUA--UUUUCUUAUUUAUCUAAACGUAAAUCAAU--- -------.........((((((.........))))))................(..(((((....(((((--......)))))....)))))..)......--- ( -8.00, z-score = -1.44, R) >consensus ______GGCCGAUUUUUGGCAAUUUCAAUGAUGG_UAACAUCAUGAUUUUUUGCGAAAAUCGUGAAAAUA__GAAUGUCCUUUUUUUGAAUGCCAAUCAAUUGG .........(((((((((.........((((((.....)))))).........))))))))).......................................... ( -3.98 = -5.67 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:14 2011