| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,680,084 – 1,680,199 |
| Length | 115 |
| Max. P | 0.635472 |
| Location | 1,680,084 – 1,680,199 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.84 |
| Shannon entropy | 0.31551 |
| G+C content | 0.44264 |
| Mean single sequence MFE | -26.88 |
| Consensus MFE | -22.26 |
| Energy contribution | -22.07 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.635472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1680084 115 - 24543557 AAUGCAGGGCUUCCUGCAGGACUUCCUUUCCUU--UCCUCGUUCCUUUUCCAUUUCUGCUUCGGCUUCAUGCAAAUCACAAUUUGUGGAAUUUCAUAACUUGUUGGCAAUUUGCAGG ..((((((....))))))(((.......)))..--..............((......((....))....(((((((..((((((((((....))))))...))))...))))))))) ( -26.10, z-score = -0.90, R) >droEre2.scaffold_4784 1663439 105 - 25762168 AAUGCAGGGCUUCCUGCAGGACUUCCUCUUCC-------UGUUCCUUUUCUGCU-----GCCGCCUUCAUGCAAAUCACAAUUUGUGGAAUUCCAUAACUUGCUGGCAAUUUGCAGG ...(((((....)))))((((........)))-------).........(((((-----(((((......))......(((.((((((....)))))).)))..))))....)))). ( -30.10, z-score = -1.68, R) >droYak2.chr3L 1631264 116 - 24197627 AGUGCAGGGCUUCCUGCAGGACUUCCUCUUCCUUUUUCUUGUUCUUUUUCUGCUUCU-GCCUGCCUUCAUGCAAAUCACAAUUUGUGGAAUUUCAUAACUUGUUGGCAAUUUGCAGG ..((((((....))))))(((........))).................((((...(-((((((......)))....((((.((((((....)))))).)))).))))....)))). ( -28.80, z-score = -1.32, R) >droSim1.chr3L 1241065 98 - 22553184 AAUGCAGGGCUUCCUGCAGGACUUCCUUUCGUU--UCCUGUUCCCUUUUC-----------------CAUGCAAAUCACAAUUUGUGGAAUUUCAUAACUUGUUGGCAAUUUGCAGG ..((((((....))))))((....)).......--..............(-----------------(.(((((((..((((((((((....))))))...))))...))))))))) ( -22.50, z-score = -0.51, R) >consensus AAUGCAGGGCUUCCUGCAGGACUUCCUCUCCCU__UCCUUGUUCCUUUUCUGCU______CCGCCUUCAUGCAAAUCACAAUUUGUGGAAUUUCAUAACUUGUUGGCAAUUUGCAGG ..((((((....))))))((....))...........................................((((((((((((.((((((....)))))).))).))...))))))).. (-22.26 = -22.07 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:13 2011