| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,670,883 – 1,671,003 |
| Length | 120 |
| Max. P | 0.904504 |
| Location | 1,670,883 – 1,671,003 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 63.65 |
| Shannon entropy | 0.58033 |
| G+C content | 0.53550 |
| Mean single sequence MFE | -27.28 |
| Consensus MFE | -16.91 |
| Energy contribution | -16.48 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.904504 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1670883 120 - 24543557 AUUUUGUUCCGGGUUUCUCUAUCCUCACUCAUGCGUCCCCAUCAGGUGCAUUCGUAUCUGGCUGGCUGGAAUCCUGUUGCCCAUCGUGACCCUUCAGCAUCACCUGUCCCCGGUGCACUG ....(((.(((((..........................((((((((((....)))))))).))((((((.....((..(.....)..))..))))))..........))))).)))... ( -30.70, z-score = -0.53, R) >droMoj3.scaffold_6654 988397 104 + 2564135 ----------------AUCUUACUUCUAUGCCUAAUCCCUUUCAGGUGCAUUCGCAUCUGGAUGGCUGGCAUACUGCUGCCAUUGAUCACGCUCCAGCAUCACUUGUCCCCGGUGCACUG ----------------.............((...(((.....(((((((....)))))))((((((.(((.....))))))))))))...))....(((((..........))))).... ( -27.90, z-score = -1.24, R) >droVir3.scaffold_13049 2289511 105 - 25233164 ---------------AUUCCUUCUAAUCCAGUUAAUCCUAUGCAGGUGCAUUCGCAUCUGGCUGGGCGGCAUCCUGCUGCCGCUGAUCACCCUGCAGCAUCAUCUGUCGCCGGUGCACUG ---------------.............((((..........(((((((....)))))))(((.(((((((...((((((.............)))))).....))))))).).)))))) ( -34.02, z-score = -1.02, R) >droGri2.scaffold_15110 3325926 92 - 24565398 ----------------------------CUCUUUCUUUCUCCUAGGUGCAUUCGCAUUUGGUUAACUGGCAUCCUCUUGCCGCUAAUCACGCUCCAUCAUCACCUGUCGCCGGUUCACUG ----------------------------.............((((((((....))))))))..(((((((...........((.......))..((........))..)))))))..... ( -16.50, z-score = -1.16, R) >consensus _________________UCUUUCUUCUCCACUUAAUCCCUUUCAGGUGCAUUCGCAUCUGGCUGGCUGGCAUCCUGCUGCCGCUGAUCACCCUCCAGCAUCACCUGUCCCCGGUGCACUG ....................................((...((((((((....))))))))..)).(((((......)))))..............(((((..........))))).... (-16.91 = -16.48 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:11 2011