| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,661,885 – 1,661,983 |
| Length | 98 |
| Max. P | 0.545500 |
| Location | 1,661,885 – 1,661,983 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 73.56 |
| Shannon entropy | 0.51632 |
| G+C content | 0.62853 |
| Mean single sequence MFE | -38.43 |
| Consensus MFE | -20.23 |
| Energy contribution | -20.64 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545500 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 1661885 98 - 24543557 CCUUGCGGCCGGCGUUGGCAAGCGGCGCCAACAAGACCAGGCGACCAGCAGUCUCCAAGAGGACUCACCCGGACUGCGCUUGCGCCUGCCAACAGAAG--------------------- ......(((.(((((.(((....((((((..........)))).)).(((((((....((....))....)))))))))).))))).)))........--------------------- ( -41.30, z-score = -1.64, R) >droPer1.super_27 555389 98 + 1201981 CCUUGCGGCCGGCGUUAACAAGCGGCGCCAAGAAAACCAGGCGACCAGGAAUGCCCAGAAAGUCGAACCCUGACUGCGCCUGCGCCUGCCA--AUCCGCA------------------- ...(((((..((((((.......))))))........((((((..((((...((......(((((.....))))))).))))))))))...--..)))))------------------- ( -33.90, z-score = -0.86, R) >dp4.chrXR_group6 7808880 98 - 13314419 CCUUGCGGCCGGCGUUAACAAGCGGCGCCAAGAAAACCAGGCGACCAGGAAUGCCCAGAAAGUCGAACCCUGACUGCGCCUGCGCCUGCCA--AUCCGCA------------------- ...(((((..((((((.......))))))........((((((..((((...((......(((((.....))))))).))))))))))...--..)))))------------------- ( -33.90, z-score = -0.86, R) >droAna3.scaffold_13337 22118083 98 + 23293914 CAUUGCGGCCGGCGUUGGCAAGCGGCGCCAACAAGACCAGGCGAACAGCAGUUUCCAGAAGGAAUCCCAAGGACUGCGCAUGCGCUUGCCAGCAACAU--------------------- ....((.....))(((((((((((.((((..........))))....((((.((((....))))(((...))))))).....))))))))))).....--------------------- ( -37.30, z-score = -1.43, R) >droEre2.scaffold_4784 1641371 98 - 25762168 CCUUGCGGCCGGCGUUGGCAAGCGGCGCCAAGAAGACCAGGCGACCAGCAGUCUCCAAGAGGACUCACCCAGACUGCGCUUGCGCCUGCCAACAGAAG--------------------- ......(((.(((((.(((....((((((..........)))).)).(((((((....((....))....)))))))))).))))).)))........--------------------- ( -41.30, z-score = -1.90, R) >droYak2.chr3L 1612627 98 - 24197627 CCUUGCGGCCGGCGUUGGCAAGCGGCGCCAACAAGACCAGGCGACCAGCAGUCUCCAAGAGGACUCAUCCAGACUGCGCGUGCGCUUGCCAACAGAAG--------------------- ....((.....))((((((((((((((((..........)))).)).(((((((......(((....))))))))))......)))))))))).....--------------------- ( -41.40, z-score = -1.98, R) >droSec1.super_2 1688297 98 - 7591821 CCUUGCGGCCGGCGUUGGCAAGCGGCGCCAACAAGACCAGGCGACCAGCAGUCUCCAAGAGGACUCACCCGGACUGCGCUUGCGCCUGCCAACAGAAG--------------------- ......(((.(((((.(((....((((((..........)))).)).(((((((....((....))....)))))))))).))))).)))........--------------------- ( -41.30, z-score = -1.64, R) >droSim1.chr3L 1222834 98 - 22553184 CCUUGCGGCCGGCGUUGGCAAGCGGCGCCAACAAGACCAGGCGACCAGCAGUCUCCAAGAGGACUCACCCGGACUGCGCUUGCGCCUGCCAACAGAAG--------------------- ......(((.(((((.(((....((((((..........)))).)).(((((((....((....))....)))))))))).))))).)))........--------------------- ( -41.30, z-score = -1.64, R) >droVir3.scaffold_13049 2279479 92 - 25233164 ---------CGGUUUUGGCAAGCGGCGCCAAGAAGAACAGGCGCACAGCAAUGUCGCGAAAGACGCUCAACGACUGCGCCUGCGUCUGCCAGAAUACGCAG------------------ ---------..((((((((..((((((((..........)))))(((....))))))...((((((....((....))...))))))))))))))......------------------ ( -34.70, z-score = -1.23, R) >droMoj3.scaffold_6654 978989 101 + 2564135 CAUUGCGGCCGGUUUUGGCAAGCGGCGCCAAGAAGAACAGGCGCACAGCACAGCCGAAGAAGCCGCACAGCGACUGCGCCUGCGUCUGCCAGAAUACGCAA------------------ ...((((((...(((((((..((.(((((..........)))))...))...)))))))..))))))..(((....))).(((((.(......).))))).------------------ ( -39.20, z-score = -0.79, R) >droGri2.scaffold_15110 3316366 107 - 24565398 CAUUGCGGCCGGUUUUGGCAAGCGGCGCCAAGAAGAACAGGCGAACAGCAAUGCCCAGAAAGUUGCAUGGCGACUGCGCCUGCGUCUGUCAGAGUCCAACACGUAUG------------ ...((((...((((((((((.(((((((...........((((........)))).....((((((...))))))))))).))...)))))))).))....))))..------------ ( -34.20, z-score = 0.57, R) >droWil1.scaffold_180698 867081 119 - 11422946 CAUUGCGGCCGGCUUUGGCUACCGGCGCUACCAAAGUCAGGAGACCAGCAACAUCCAGAAAGUUGAUUGGCGAAUGCGCCUGCGCAUGCCAAACUAAUGCUGCGGCUGCUGGCCCACAG ...((.(((((((...((((...(((((..((.......)).(.((((((((.........)))).)))))....))))).((((((.........)))).)))))))))))))))... ( -41.40, z-score = 0.21, R) >consensus CCUUGCGGCCGGCGUUGGCAAGCGGCGCCAACAAGACCAGGCGACCAGCAGUCUCCAAAAAGACGCACCCCGACUGCGCCUGCGCCUGCCAACAUAAG_____________________ ......(((.(((((((((.......)))))).....((((((..(((.........................))))))))).))).)))............................. (-20.23 = -20.64 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:07 2011