| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,661,673 – 1,661,773 |
| Length | 100 |
| Max. P | 0.511968 |
| Location | 1,661,673 – 1,661,773 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 65.16 |
| Shannon entropy | 0.75999 |
| G+C content | 0.53939 |
| Mean single sequence MFE | -33.39 |
| Consensus MFE | -8.63 |
| Energy contribution | -8.58 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1661673 100 + 24543557 ----AUUUUCUGGUUCCCCCCUUCAUUAAGUGGCUACCUUGUGGCCACAGCACUGCCGGCUCC---CAGCAGUGUCCCCAGCAGACUGCUCGAGGAGUACUUGAGCA ----.(((.((((................((((((((...)))))))).(((((((.((...)---).)))))))..)))).)))..(((((((.....))))))). ( -40.10, z-score = -3.28, R) >droPer1.super_27 555144 100 - 1201981 ----GUUUUAAGUAAAGCUGUGCAAAUAAGGUGCUACCUCGAUGACACAGCACUGCCAGCACC---GAGCAGUGUCUCCAGCAAUGUGUUCGAGGAGUGCUUCAGCA ----............((((........(((..((.((((((..(((((((((((((......---).))))))).........)))))))))))))..))))))). ( -34.20, z-score = -1.77, R) >dp4.chrXR_group6 7808635 100 + 13314419 ----GUUUUAAGUAAAGCUGUGCAAAUAAGGUGCUACCUCGAUGACACAGCACUGCCAGCACC---GAGCAGUGUCUCCAGCAAUGUGUUCGAGGAGUGCUUCAGCA ----............((((........(((..((.((((((..(((((((((((((......---).))))))).........)))))))))))))..))))))). ( -34.20, z-score = -1.77, R) >droEre2.scaffold_4784 1641161 98 + 25762168 ----AUUUUCUGGUUCCCU--UUCACUAGGUGGCUACCUUGUUGCCACAGCACUGCCGGCUCC---CAGCAGUGUCUCCAGCAGGCUGCUCGAGGAAUACUUGAGCA ----......((((..(((--......)))..)))).(((((((.....(((((((.((...)---).)))))))...)))))))..(((((((.....))))))). ( -36.90, z-score = -1.98, R) >droYak2.chr3L 1612417 98 + 24197627 ----AGUUUCUGGUUCGCU--UUCACUAGGUGGCUACCUUGUUGCCAUAGCACUGCCGGCUCC---CAGCAGUGUCUCCAGCAGGUUGCUCGAGGAAUACUUGAGCA ----((((((((((.....--...)))))).))))..(((((((.....(((((((.((...)---).)))))))...))))))).((((((((.....)))))))) ( -35.20, z-score = -1.24, R) >droSec1.super_2 1688087 98 + 7591821 ----AUAUUCUGGUUCCCC--UUCAAUAAGUGGCUACCUUGUGGCCACAGCACUGCCGGCUCC---CAGCAGUGUCCCCAGCAGACUGCUCGAGGAACACUUGAGCA ----.....((((......--........((((((((...)))))))).(((((((.((...)---).)))))))..))))......(((((((.....))))))). ( -39.50, z-score = -3.30, R) >droSim1.chr3L 1222624 98 + 22553184 ----AUAUUCUGGUUCCCC--UUCAAUAAGUGGCUACCUUGUGGCCACAGCACUGCCGGCUCC---CAGCAGUGUCCCCAGCAGACUGCUCGAGGAAUACUUGAGCA ----.....((((......--........((((((((...)))))))).(((((((.((...)---).)))))))..))))......(((((((.....))))))). ( -39.50, z-score = -3.49, R) >droVir3.scaffold_13049 2279242 104 + 25233164 -AUCUAGACACGGAACACUUUGGGU--GUCCAUUUACCUGGCCACCGCCGCUUUGCCAGCGCCGAGCAGCAGCGUCUCGAGCCAUGUGCUCGACGAGUGCUUGAGCA -.((.((((.(...........(((--(.(((......))).))))((.((((.((....)).)))).)).).)))).))((((.(..(((...)))..).)).)). ( -34.40, z-score = -0.01, R) >droMoj3.scaffold_6654 978759 106 - 2564135 -UCCUAUAUAAGCCCCUCUCUCAGCCCAUUUGUUUACCUGGCCGCCGCUGCGCUGCCAGCGCCCAGCAGCAGCGUUUGCAGCAACGUGCUAGACGAGUGCUUGAGCA -..................(((((..(((((((....(((((((..((((((((((..((.....)).)))))....)))))..)).)))))))))))).))))).. ( -34.60, z-score = -0.67, R) >droGri2.scaffold_15110 3316134 96 + 24565398 AGUUUAUA---GGGACUCUCUA--------UAAUUACCUCGCCACCGCUGCGCUGCCAGCACCGAGGAGCAGCGUCUCAAGCAAUGAGCUCGACGAAUGCUUGAGCA ...(((((---(((...)))))--------)))............((((((....((........)).)))))).((((((((..............)))))))).. ( -26.34, z-score = 0.49, R) >droWil1.scaffold_180698 866837 96 + 11422946 --------UCUUAUCCCUCCCUUGAACUCUUAUUCAUCAGUUUUCUUUUUACCUGCCAGCACC---GAGCAAUGUCUCUAGCAAUGUGUUCGACGAUUGCUUUAGCA --------..............((((......))))......................((...---((((((((((...(((.....))).))).)))))))..)). ( -12.40, z-score = 0.07, R) >consensus ____AUUUUCUGGUUCCCU_UUUCAAUAAGUGGCUACCUUGUUGCCACAGCACUGCCAGCUCC___CAGCAGUGUCUCCAGCAAUGUGCUCGAGGAAUGCUUGAGCA .................................................(((((((............)))))))............(((.((.......)).))). ( -8.63 = -8.58 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:06 2011