| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,656,342 – 1,656,439 |
| Length | 97 |
| Max. P | 0.589022 |
| Location | 1,656,342 – 1,656,439 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 75.19 |
| Shannon entropy | 0.46041 |
| G+C content | 0.57838 |
| Mean single sequence MFE | -27.95 |
| Consensus MFE | -17.98 |
| Energy contribution | -19.59 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589022 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 1656342 97 - 24543557 ---CACUAGCACACCGCCCAUUUGCAAGACGCCCCAAGUGACGGCGAAUGGCGACGCAAAGAGUCCGAC---------AUUGGUUCACAAGAACCACGUGCACCACAAC-- ---.....((((..((((.((((((....(((.....)))...))))))))))................---------..((((((....)))))).))))........-- ( -28.60, z-score = -2.42, R) >droPer1.super_27 549132 100 + 1201981 CGACACCACGACGCCGCCCAUUUGCAAAGCGCCCCAAGUGGCUGCCAAUGGCGACGUUAAAAGUCCACCAGCAACGAACAUGAUAACUAAGAUUCAUCAA----------- .(((.....((((.((((.(((.(((....(((......)))))).))))))).))))....)))..............((((..........))))...----------- ( -19.50, z-score = -0.14, R) >dp4.chrXR_group6 7802711 100 - 13314419 CGACACCACGACGCCGCCCAUUUGCAAAGCGCCCCAAGUGGCUGCCAAUGGCGACGUUAAAAGUCCACCAGCAACGAACAUGAUAACUAAGAUCCAUCAA----------- .(((.....((((.((((.(((.(((....(((......)))))).))))))).))))....)))...................................----------- ( -19.40, z-score = -0.22, R) >droAna3.scaffold_13337 22112478 108 + 23293914 ---CGCCAGCACACCGCCCAUUUGCAAGACGCCCCUGGUGGCGGCGAAUGGCGAGGCCAAGAGUCCGACAGUGCAGGGAUUUGGUCACAAGAUCCACCUGCACCACCACGG ---.(((.((.....))((((((((....((((...))))...))))))))...))).......(((...(((((((.....((((....))))..))))))).....))) ( -36.90, z-score = -0.12, R) >droEre2.scaffold_4784 1635931 97 - 25762168 ---CGCCAGCACACCGCCCAUUUGCAAGACGCCCCAAGUGGUGGCGAAUGGCGAAGCAAAGAGUCCGAC---------AUUGGUUUACAAGAACCACGUGCACCACAAC-- ---.....((((..((((.((((((....((((......))))))))))))))................---------..((((((....)))))).))))........-- ( -27.80, z-score = -1.11, R) >droYak2.chr3L 1607016 97 - 24197627 ---CGCCGGCACACCGCCCAUUUGCAAGACGCCCCAAGUGGCGGCGAAUGGCGACGCAAAGAGUCCGAC---------AUUGGUUUACAAGAACCACGUGCACCACAAC-- ---.....((((..((((.((((((....((((......))))))))))))))................---------..((((((....)))))).))))........-- ( -29.50, z-score = -0.80, R) >droSec1.super_2 1682529 97 - 7591821 ---CACCAGCACACCGCCCGUUUGCAAGACGCCCCAAGUGGCGGCGAAUGGCGACGCAAAGAGUCCGAC---------AUUGGUUCACAAGAACCACGUGCACCACAAC-- ---.....((((..((((.((((((....((((......))))))))))))))................---------..((((((....)))))).))))........-- ( -31.40, z-score = -1.81, R) >droSim1.chr3L 1216991 97 - 22553184 ---CACCAGCACCCCGCCCGUUUGCAAGACGCCCCAAGUGGCGGCGAAUGGCGACGCAAAGAGUCCGAC---------AUUGGUUCACAAGAACCACGUGCACCACAAC-- ---.....((((..((((.((((((....((((......))))))))))))))................---------..((((((....)))))).))))........-- ( -30.50, z-score = -1.56, R) >consensus ___CACCAGCACACCGCCCAUUUGCAAGACGCCCCAAGUGGCGGCGAAUGGCGACGCAAAGAGUCCGAC_________AUUGGUUCACAAGAACCACGUGCACCACAAC__ ........(((...((((.((((((....((((......))))))))))))))...........................((((((....))))))..))).......... (-17.98 = -19.59 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:05 2011