| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,654,488 – 1,654,589 |
| Length | 101 |
| Max. P | 0.978915 |
| Location | 1,654,488 – 1,654,589 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 64.41 |
| Shannon entropy | 0.79118 |
| G+C content | 0.56657 |
| Mean single sequence MFE | -33.28 |
| Consensus MFE | -14.85 |
| Energy contribution | -14.67 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.978915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1654488 101 - 24543557 GCCGGAGUCCGUCGAUGGCCGCCUUCUGAGUGUUAACCGCGUCGCUGCGCAGGAUGUGCGGCGAGUCUUGAGGCACAGGUGCCCCCCACAAUCAUCACCAU------- ((((..(.....)..)))).(((((..(((((.....))).(((((((((.....))))))))).))..)))))...((((..............))))..------- ( -34.54, z-score = 0.42, R) >droSim1.chr3L 1215145 99 - 22553184 GCCGGAGUCCGUCGAUGGUCGCCUUCUGAGUGUUAACCGCGUCGCUGCGCAAGAUGUGCGGCGAGUCCUGAGGCACGGGUGCCCCU--CAAUCAUCACCAU------- (.(((...))).)((((((.(((((..(((((.....))).(((((((((.....))))))))).))..)))))..(((...))).--..)))))).....------- ( -35.00, z-score = 0.07, R) >droSec1.super_2 1680686 99 - 7591821 GCCGGAGUCCGUCGAUGGUCGCCUUCUGAGUGUUAACCGCGUCGCUGCGCAAGAUGUGCAGCGAGUCCUGAGGCACGGGUGCGCCU--CAAUCAUCACCAU------- ...(((.((.(.((.((((((((....).)))...)))))).)(((((((.....))))))))).)))((((((........))))--))...........------- ( -36.00, z-score = -0.21, R) >droYak2.chr3L 1605149 99 - 24197627 GCCGAAGUCCCUCGACGAUCGCCUUCUGAGUGUUAACCGCGUCGCUGCGCAAGAUGUGCCGCGAGUCCUGAGACACGGUUGCCCCU--CAAUCAUCACCAU------- (.(((.(((....)))..))).)...((((.(.((((((..((((.((((.....)))).))))(((....))).)))))).).))--))...........------- ( -28.90, z-score = -0.99, R) >droEre2.scaffold_4784 1634069 99 - 25762168 GCCGGAGUCCCUCGACGGUCGCUUUCUGAGUGUUAACCGCGUCGCUGCGCAAAAUGUGCCGCGAGUCCUGAGGCACGGCUGCCACU--CAAUCAUCACCAU------- ((((.....(((((((((((((((...)))))...)))...((((.((((.....)))).)))))))..))))..)))).......--.............------- ( -31.30, z-score = -0.03, R) >droAna3.scaffold_13337 22110687 97 + 23293914 GCCGGAGCCCCUCACUGGCAGCCUUCUGAGUGUUAACCGCGUCGCUGCGCAAAAUGUGCGGCGAUCCCCGAG-AGUAGUCCUCCCUAAACCAUACCAC---------- (((((.........)))))........(((..(((..(.(((((((((((.....)))))))))....)).)-..)))..)))...............---------- ( -27.30, z-score = -0.93, R) >dp4.chrXR_group6 7800701 107 - 13314419 GUCGGAGCCCCUCGAUGGCCGCCUUUUGAGUGUUAACCGAUUCGCUGCGCAAAAUGUGCGGCGAGUCGUGAG-CGAAGGAACACCUAGUGUAUCGCACUAGUCAGACU (((((.(((.......)))..))...((((((((..((((((((((((((.....))))))))))))).)..-(....))))))((((((.....)))))))))))). ( -43.40, z-score = -3.16, R) >droPer1.super_27 547130 107 + 1201981 GUCGGAGCCCCUCGAUGGCCGCCUUUUGAGUGUUAACCGAUUCGCUGCGCAAAAUGUGCGGCGAGUCGUGAG-CGAAGGAACACCUAGUGUAUCGCACUAGUCAGACU (((((.(((.......)))..))...((((((((..((((((((((((((.....))))))))))))).)..-(....))))))((((((.....)))))))))))). ( -43.40, z-score = -3.16, R) >droWil1.scaffold_180698 857803 92 - 11422946 GCCGUAGUCCCUCGAUGGCCGCCUUUUGAGUGUUGGGAUAUUACUCAUAC---AUCUAGUCAGACUUAUAGUCGCCAUAUGCACAUAUGUAAUAC------------- ..((((........(((((.......((((((.........))))))...---.........(((.....)))))))).......))))......------------- ( -16.16, z-score = 1.23, R) >droVir3.scaffold_13049 2270950 97 - 25233164 GUCGAAGUCCAUCGGCAAUAGCCUUCUGAGUGUUAACAGAUUCGCUGCGCAAAAUGUGCGGCGAACU--GUAAGUC------AGCCGGAAACCCCC-CCAACCCUA-- (((((......))))).....((..((((.(....((((.((((((((((.....))))))))))))--)).).))------))..))........-.........-- ( -33.10, z-score = -3.91, R) >droMoj3.scaffold_6654 970086 104 + 2564135 GUCGGAGUCCUUCGGCGAUUGCCUUUUGAGUGUUAACCGAUUCGCUGCGCAAAAUAUGCGGCGAACU--GUAAAGCAAAAGAAGGGGGAAUCCCCCGCCUACUCUA-- ...(((((.....((((....((((((...((((...((.(((((((((.......))))))))).)--)...))))..))))))(((....))))))).))))).-- ( -35.80, z-score = -1.93, R) >droGri2.scaffold_15110 3307348 100 - 24565398 GUCGAAGUCCUUCGACGAUUGCAUUCUGAGUGUUAACCGAUUCGUUGCGCCAAAUGUGCAUCGAAUCUGGUGGAGC------AAGCGUGGAUCCCAAUUAGCUCUU-- ((((((....))))))(((((.((((((..((((.(((((((((.(((((.....))))).)))))).)))..)))------)..)).))))..))))).......-- ( -34.50, z-score = -2.73, R) >consensus GCCGGAGUCCCUCGAUGGUCGCCUUCUGAGUGUUAACCGAGUCGCUGCGCAAAAUGUGCGGCGAGUCCUGAGGCACAGGUGCACCU__CAAUCACCACCAU_______ ((((..(.....)..))))......................(((((((((.....)))))))))............................................ (-14.85 = -14.67 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:02 2011