| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,639,188 – 1,639,241 |
| Length | 53 |
| Max. P | 0.883668 |
| Location | 1,639,188 – 1,639,241 |
|---|---|
| Length | 53 |
| Sequences | 7 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 65.18 |
| Shannon entropy | 0.63482 |
| G+C content | 0.47030 |
| Mean single sequence MFE | -12.51 |
| Consensus MFE | -7.96 |
| Energy contribution | -7.04 |
| Covariance contribution | -0.91 |
| Combinations/Pair | 1.75 |
| Mean z-score | -0.62 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1639188 53 - 24543557 -UUUAACUUUAUUGGAUCGGUGCACGGCCACACUGGCGGCGUGUUUACCAAAAU-- -.................(((((((((((.....)))..)))))..))).....-- ( -13.00, z-score = -0.77, R) >droSim1.chr3L_random 102674 53 - 1049610 -UUUAACUUCAUUGGAUCGGUGCACGGCCACACUGGCCGCGUGUUUACAAAAAU-- -..........(((....((..(.(((((.....))))).)..))..)))....-- ( -14.00, z-score = -1.35, R) >droSec1.super_2 1665337 53 - 7591821 -UUUAACUUCAUUGGAUCGGUGCACGGCCACACUGGCCGCGUGUUUACAAAAAU-- -..........(((....((..(.(((((.....))))).)..))..)))....-- ( -14.00, z-score = -1.35, R) >droYak2.chr3L 1590290 54 - 24197627 -UGUAACUUCGUGGGAUCGGUGCACGGUCACACUGGCCGCGUGUUUACAAAAUAU- -(((((...(((((..((((((........)))))))))))...)))))......- ( -15.90, z-score = -1.27, R) >droEre2.scaffold_4784 1618681 55 - 25762168 -UUUAAGUUCGUGGGAUCGGUGCACGGCCACACUGGCCGCGUGUUUACCAAAAAAU -..........(((....((..(.(((((.....))))).)..))..)))...... ( -16.30, z-score = -0.94, R) >dp4.chrXR_group8 4196889 53 - 9212921 GUUAACGGUUCUCAACAUGACAGACAA-CGCGGUUGUUGCUUGUUUUCAUUUCC-- ................((((.((((((-.(((.....)))))))))))))....-- ( -7.20, z-score = 0.67, R) >droPer1.super_29 432673 53 - 1099123 GUUAACGGUUCUCAACAUGACAGACAA-CGCGGUUGUUGCUUGUUUUCAUUUCC-- ................((((.((((((-.(((.....)))))))))))))....-- ( -7.20, z-score = 0.67, R) >consensus _UUUAACUUCAUUGGAUCGGUGCACGGCCACACUGGCCGCGUGUUUACAAAAAU__ ....................(((.(((((.....))))).)))............. ( -7.96 = -7.04 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:01 2011