| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,130,590 – 4,130,698 |
| Length | 108 |
| Max. P | 0.805752 |
| Location | 4,130,590 – 4,130,698 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 81.86 |
| Shannon entropy | 0.34023 |
| G+C content | 0.52042 |
| Mean single sequence MFE | -31.82 |
| Consensus MFE | -20.37 |
| Energy contribution | -20.93 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.805752 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4130590 108 + 23011544 CCACAGAUCGGAUCACUGCAUUAUUCAUGCAGA-AUGCAUGCGCUUCCGAGGCGGGAAAUGGGAAAUGUGAGGGAAAAGCGGAGAAAACGAGCGGUUCGAGGUGGGAAU ((((...(((((((.((((((.....)))))).-..((..(((.((((.(.........).)))).)))..........((.......)).))))))))).)))).... ( -30.00, z-score = -0.92, R) >droAna3.scaffold_12943 697875 100 - 5039921 CCACAGAUCGGAUCACUGCAUUAUUCAUGCAGUUCUCCAUGCGGAUU----GUGGGCCACCGGA-----UGGCACUGGGUUUAGAAUAUAGGGAACUCUAGGUGGAAAA ((((((.(((((..(((((((.....)))))))..)))....)).))----)))).(((((((.-----.....))((((((..........))))))..))))).... ( -29.60, z-score = -0.74, R) >droEre2.scaffold_4929 4190941 101 + 26641161 CCACAGAUCGGAUCACUGCAUUAUUCAUGCAGA-CUGCAUGCGGUUCCGAGACGGGAAACG-------UUGGGGAAAAGCGGAGAAAACGAGCGGUACGAGGUGGGAAA ((((...(((.....((((((.....))))))(-((((..((..((((..((((.....))-------))..))))..))(.......)..))))).))).)))).... ( -36.00, z-score = -3.64, R) >droYak2.chr2L 4152436 108 + 22324452 CCACAGAUCGGAUCACUGCAUUAUUCAUGCAGA-CUGCAUGCGGUUUCGAGACGGGAAAUGGGAAAUGUGGGGAAAACGCGGAGAAAACGAGCGGUACGAGGUGGGAAA ((((...(((.....((((((.....))))))(-((((.(.(.(((((.......))))).).)..((((.......))))..........))))).))).)))).... ( -29.90, z-score = -1.81, R) >droSec1.super_5 2229372 105 + 5866729 CCACAGAUCGGAUCAC---AUUAUUCAUGCAGA-CUGCAUGCGGUUCCGAGGCGGAAAAUGGGAAAUGUGGGGGAAAAGCGGAGAAAACGAGCGGUUCGAGGUGGGAAA ((((...(((((((((---(((.(((((.....-((((...((....))..))))...))))).))))).........((...........))))))))).)))).... ( -30.40, z-score = -1.81, R) >droSim1.chr2L 4086208 108 + 22036055 CCACAGAUCGGAUCACUGCAUUAUUCAUGCAGA-CUGCAUGCGGUUCCGAGGCGGGAAAUGGGAAAUGUGGGGGAAAAGCGGAGAAAACGAGCGGUUCGAGGUGGGAAA ((((...(((((((.(..((((.(((((.....-((((...((....))..))))...))))).))))..).......((...........))))))))).)))).... ( -35.00, z-score = -2.49, R) >consensus CCACAGAUCGGAUCACUGCAUUAUUCAUGCAGA_CUGCAUGCGGUUCCGAGGCGGGAAAUGGGAAAUGUGGGGGAAAAGCGGAGAAAACGAGCGGUUCGAGGUGGGAAA ((((...(((((((.((((((.....))))))....((..((..((((........................))))..))(.......)..))))))))).)))).... (-20.37 = -20.93 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:26 2011