| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,610,900 – 1,610,990 |
| Length | 90 |
| Max. P | 0.872710 |
| Location | 1,610,900 – 1,610,990 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 73.36 |
| Shannon entropy | 0.47476 |
| G+C content | 0.41222 |
| Mean single sequence MFE | -16.26 |
| Consensus MFE | -12.73 |
| Energy contribution | -11.64 |
| Covariance contribution | -1.09 |
| Combinations/Pair | 1.37 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.872710 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1610900 90 - 24543557 CCCGUGUCCAUUGUCCCGUGUGUCCAGCCAA--CUUUGAGUGCAAUUAAAAAAUUGUCCGC-CAUGCGAGGUAAUUUUUUAAGGAUCUCAACU- ....((..(((........)))..)).....--..(((((.....((((((((((..((((-...))).)..))))))))))....)))))..- ( -18.70, z-score = -1.43, R) >droSim1.chr3L_random 90071 74 - 1049610 ----------------CCCGUGUCCAGCCAU--CUUUGAGUGCAAUUAAAAAAUUGUCCGC-CAUGCGAGGUAAUUUUUUAAGGAUCUCAACU- ----------------...............--..(((((.....((((((((((..((((-...))).)..))))))))))....)))))..- ( -16.40, z-score = -1.83, R) >droSec1.super_2 1637060 74 - 7591821 ----------------CCCGUGUCCAGCCAU--CUUUGAGUGCAAUUAAAAAAUUGUCCGC-CAUGCGAGGUAAUUUUUUAAGGAUCUCAACU- ----------------...............--..(((((.....((((((((((..((((-...))).)..))))))))))....)))))..- ( -16.40, z-score = -1.83, R) >droYak2.chr3L 1561884 74 - 24197627 ----------------CCAGUGUGCAGCCAU--CUUUGAGUGCCAUUAAGAAAUUGCCCGC-CAUGCGGGGUAAUUUUUUAAGGAUCUCAACU- ----------------...............--..(((((..((.((((((((((((((((-...)).))))))))))))))))..)))))..- ( -23.60, z-score = -2.37, R) >droEre2.scaffold_4784 1590283 74 - 25762168 ----------------CCAGUGUCCAGCCAU--CUUUGAGUGGAAUUAAAAAAUUGUCCGC-CAUGCGAGGUCAUUUUUUAAGGAUCUCAACU- ----------------.....((((..((((--......))))..(((((((((..(((((-...))).))..))))))))))))).......- ( -15.30, z-score = -0.68, R) >droAna3.scaffold_13337 12485603 74 - 23293914 ----------------CCAGUGUCCAGUCAC-AUUUUGAGUGGAAUUAAAAAAUUUGUUGC-CA-ACGA-ACGAUUUUUUAAGGAUCUCAACAA ----------------((....((((.(((.-....))).)))).((((((((((..(((.-..-.)))-..)))))))))))).......... ( -14.90, z-score = -1.13, R) >dp4.chrXR_group8 4167580 84 - 9212921 ---------CGCCCCCCCAUCGUCUCGUCUUGCCUUUGAGUAGAAUUAAAAAAUUGUUUUCAUUCAAGGAAGGAUUUUUUAAGGAUCUCAACU- ---------..........................(((((.....((((((((((.((((.......)))).))))))))))....)))))..- ( -12.40, z-score = 0.67, R) >droPer1.super_29 403518 84 - 1099123 ---------CCGCCCCCCAUCGUCUCGUCUUGCCUUUGAGUAGAAUUAAAAAAUUGUUUUCAUUCAAGGAAGGAUUUUUUAAGGAUCUCAACU- ---------..........................(((((.....((((((((((.((((.......)))).))))))))))....)))))..- ( -12.40, z-score = 0.67, R) >consensus ________________CCAGUGUCCAGCCAU__CUUUGAGUGCAAUUAAAAAAUUGUCCGC_CAUGCGAGGUAAUUUUUUAAGGAUCUCAACU_ ...................................(((((.....((((((((((.((((......)).)).))))))))))....)))))... (-12.73 = -11.64 + -1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:58 2011