| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,589,309 – 1,589,413 |
| Length | 104 |
| Max. P | 0.852351 |
| Location | 1,589,309 – 1,589,413 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 82.03 |
| Shannon entropy | 0.30871 |
| G+C content | 0.47716 |
| Mean single sequence MFE | -30.28 |
| Consensus MFE | -20.65 |
| Energy contribution | -21.90 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852351 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1589309 104 + 24543557 CGAGUUGCUGGCUUCCAUCUCUUGACUCUUCCAUAGACAUA-GUCGUCGUAGAUAGAAACUGCCUGGAGGCUCAUCAUUCGAGUGAACAAUUUGCCCAGCAAUUU .((((((((((((((((..................(((...-...)))((((.......)))).)))))))...((((....))))..........))))))))) ( -27.40, z-score = -0.97, R) >droSim1.chr3L 1172201 105 + 22553184 CGAGUUGCUGGCUUCCAGCUCUGGACUCUAGACUUCAUAGACCAUCUCGCACAUAGAAACUGCCUGGAGGCUCAUCAUUCUGGUAAACAAUUUGCCCAGCAAUUU .(((((((((((((((((...(((..((((.......)))))))....(((.........)))))))))))..........(((((.....)))))))))))))) ( -30.90, z-score = -1.91, R) >droSec1.super_2 1615594 105 + 7591821 CGAGUUGCUGGCUUCCAGCUCUGGACUCUAGACUUCAUAGACACACUCGCACAUAGAAACUGCCUGGAGGCUCAUCAUUCUGGUAAACAAUUUGCCCAGCAAUUU .(((((((((((((((((.(((((...)))))................(((.........)))))))))))..........(((((.....)))))))))))))) ( -29.60, z-score = -1.73, R) >droEre2.scaffold_4784 1568249 95 + 25762168 CGAGCUGCUGGCUUCCAUCUCUAGAGUCUAGACUCCAGA------CUC---UAUAGACACUGCCUGCAGGCUCCUCAUU-UGGCAAACAAUUUGCCCAGCAAUUU .(((((((.(((.....(((.((((((((.......)))------)))---)).)))....))).))).))))......-.(((((.....)))))......... ( -33.20, z-score = -3.39, R) >consensus CGAGUUGCUGGCUUCCAGCUCUGGACUCUAGACUUCAUAGA____CUCGCACAUAGAAACUGCCUGGAGGCUCAUCAUUCUGGUAAACAAUUUGCCCAGCAAUUU .(((((((((((((((((...(((..((((.......................))))..))).))))))))..........(((((.....)))))))))))))) (-20.65 = -21.90 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:57 2011