| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,544,614 – 1,544,717 |
| Length | 103 |
| Max. P | 0.949520 |
| Location | 1,544,614 – 1,544,717 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 92.93 |
| Shannon entropy | 0.11781 |
| G+C content | 0.27034 |
| Mean single sequence MFE | -13.00 |
| Consensus MFE | -11.10 |
| Energy contribution | -11.70 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1544614 103 - 24543557 AAUCUCAUUUCACUCA---CUCAAGUACCAAAAUAUA--AUAAUAUACAAAAAAUAUGUACGCCAUAAGUUGGUCGUUAUAAAAAACAAAGAUUCUUUGGUAAAAUCA ................---......(((((((((((.--...))))........((((.((((((.....))).)))))))..............)))))))...... ( -12.50, z-score = -1.83, R) >droSim1.chr3L 1126805 98 - 22553184 AAUCUCAUUUCACUCA---CUCAAGUACCAAAAUAUA--AUAAUAUACAAA-----UAUACGCCAUAAGUUGGUCGUAAUAAAAAACAAAGAUUCUUUGGUAAAAUCA ................---......(((((((((((.--...)))).....-----..(((((((.....))).)))).................)))))))...... ( -12.90, z-score = -2.74, R) >droSec1.super_2 1570994 98 - 7591821 AAUCUCAUUUCACUCA---CUCAAGUACCAAAAUAUA--AUAAUAUACAAA-----UAUACGCCAUAAGUUGGUCGUAAUAAAAAACAAAGAUUCUUUGGUAAAAUCA ................---......(((((((((((.--...)))).....-----..(((((((.....))).)))).................)))))))...... ( -12.90, z-score = -2.74, R) >droYak2.chr3L 1493761 101 - 24197627 AAUCUCAUUUCACUCACUCCUCAAGUACCAAAAUAUA--CUAAUAUACAAA----AUAUACGCCAUAAGUUGGUCGUAAUAAAAAACAAAGAUUCUUUGGU-AAAUCA .........................(((((((((((.--...)))).....----...(((((((.....))).)))).................))))))-)..... ( -12.90, z-score = -2.65, R) >droEre2.scaffold_4784 1523025 103 - 25762168 AAUCUCAUUUAACUCACUGCUCAAGUACCAAAAUAUAUUCUAAUAUACAAA----AUAUACGCCAUAAGUUGGUCGUAAUAAAAAACAAAGAUUCUUUGGU-AAAUCA .........................(((((((.(((((....)))))....----...(((((((.....))).)))).................))))))-)..... ( -13.80, z-score = -2.31, R) >consensus AAUCUCAUUUCACUCA___CUCAAGUACCAAAAUAUA__AUAAUAUACAAA____AUAUACGCCAUAAGUUGGUCGUAAUAAAAAACAAAGAUUCUUUGGUAAAAUCA .........................(((((((((((......))))............(((((((.....))).)))).................)))))))...... (-11.10 = -11.70 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:48 2011