| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,516,837 – 1,516,932 |
| Length | 95 |
| Max. P | 0.599437 |
| Location | 1,516,837 – 1,516,932 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 71.88 |
| Shannon entropy | 0.47312 |
| G+C content | 0.54845 |
| Mean single sequence MFE | -26.82 |
| Consensus MFE | -16.31 |
| Energy contribution | -17.29 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1516837 95 + 24543557 -------------------CAGCGGGCCGGCAGGUGCUCCUGCUCCUCGCAACUGUUCUUU---UCCACCUCUAUUCCCACUGGAAG-CUGCUCUUACCCCACUCCAGUGGCGUUCCA -------------------..(((((..((((((....)))))).)))))...........---.............((((((((..-...............))))))))....... ( -28.53, z-score = -1.29, R) >droEre2.scaffold_4784 1493166 95 + 25762168 -------------------CAGAGGGUCAGCAGGUGCUCCUGCUCGUGAUAACUGUUCUUU---UCCUCCACUCUUCCCACUGGAUG-CUGCUCUUACCCCACUCCAGUGGCGUUCCA -------------------..(((((..((((((....)))))).((....))........---)))))........((((((((((-..(......)..)).))))))))....... ( -26.40, z-score = -0.67, R) >droYak2.chr3L 1466084 95 + 24197627 -------------------CAGAGGGCCAGCAGGUGCUCCUGCUCCUGCUAACUGUUCUUU---UCCUCUUCACUUCCCACUGGAAG-CUGCUCUUACCCCACUCCAGUGGCGUUCCA -------------------..((((((.((((((.((....)).))))))...........---.........(((((....)))))-..))))))((.((((....)))).)).... ( -30.70, z-score = -2.01, R) >droSec1.super_2 1543319 95 + 7591821 -------------------CAGCGGGCCGGCAGGUGCUCCUGCUCCUCGCAACUGUUCUUU---UCCACCUGUAUUCCCACUGGAAG-CUGCUCUUACCCCACUCCAGUGGCGUUCCA -------------------..(((((..((((((....)))))).)))))...........---.............((((((((..-...............))))))))....... ( -28.53, z-score = -0.86, R) >droSim1.chr3L 1098741 95 + 22553184 -------------------CAGCGGGCCGGCAGGUGCUCCUGCUCCUCGCAACUGUUCUUU---UCCACCUCUAUUCCCACUGGAAG-CUGCUCUUACCCCACUCCAGUGGCGUUCCA -------------------..(((((..((((((....)))))).)))))...........---.............((((((((..-...............))))))))....... ( -28.53, z-score = -1.29, R) >droMoj3.scaffold_6654 2168621 118 - 2564135 CACAGAAAUUUUUGAGCAUUUUCUAACCAAUAUAAACUGGAACACUACUCAAUUGUGUAAUAGCUUGACUAUCAUUAUCUCUGAAGGAUUACACUUACCCCAGCCAAUUGGAGAUGCG ..((((....)))).((((((((...(((........)))..............(((((((..(((.(.............).))).)))))))...............)))))))). ( -18.22, z-score = -0.27, R) >consensus ___________________CAGCGGGCCAGCAGGUGCUCCUGCUCCUCGCAACUGUUCUUU___UCCACCUCUAUUCCCACUGGAAG_CUGCUCUUACCCCACUCCAGUGGCGUUCCA .......................((..(((((((....)))))).................................((((((((..................)))))))).)..)). (-16.31 = -17.29 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:47 2011