| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,495,960 – 1,496,051 |
| Length | 91 |
| Max. P | 0.538463 |
| Location | 1,495,960 – 1,496,051 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 71.94 |
| Shannon entropy | 0.46971 |
| G+C content | 0.49140 |
| Mean single sequence MFE | -29.83 |
| Consensus MFE | -16.61 |
| Energy contribution | -18.55 |
| Covariance contribution | 1.94 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.538463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1495960 91 + 24543557 AAGAAUGCGGUAUUAAUACGGGGACUAUGAUCCUGGUUACAUCCAGGCAGAUGGUUAUGUCCAUGU-CGUGGCGUGUGUGUAUGUAUAUGCA-------- .....((((((((..(((((.(..((((((((((((......)))))...((((......))))))-)))))..).)))))..)))).))))-------- ( -25.30, z-score = 0.08, R) >droEre2.scaffold_4784 1479983 98 + 25762168 AAGCAUACGGAUGGAAUACGGAGAUUAGGAUCCCGUGUGCAUCCAGGCAGAGGGU-AAAUCCAUGU-CACAGCGUGUGUGUAUAUGCACAAGAGGCAACU ..(((((((((((..((((((.(((....))))))))).))))).((((...((.-....)).)))-).....)))))).....(((.......)))... ( -32.20, z-score = -2.34, R) >droSec1.super_2 1529836 88 + 7591821 AAGAAUGCGGUAGGGAUACGGGGACUAUGAUCCUGGUUACAUCCAGGCAGAUGGU-AUGUCCGUGU-----GUGUAUGUAUAUGCACAAGGGGC------ ......((.......(((((((.(((((...(((((......)))))...)))))-...)))))))-----((((((....)))))).....))------ ( -25.70, z-score = -0.58, R) >droSim1.chr3L 1085218 99 + 22553184 AAGAAUGCGGCAGGGAUACGGGGACUAUGAUCCUGGUUACAUCCAGGCAGAUGGU-AUGUCCGUGUGUGUGGCGUGUGUGUAUGUAUAUGCACAAGGGGC ....(((((.((.(.(((((((.(((((...(((((......)))))...)))))-...))))))).).)).)))))((((((....))))))....... ( -36.10, z-score = -2.02, R) >consensus AAGAAUGCGGUAGGAAUACGGGGACUAUGAUCCUGGUUACAUCCAGGCAGAUGGU_AUGUCCAUGU_CGUGGCGUGUGUGUAUGUACAUGCA________ ....(((((.((.(.(((((((.(((((...(((((......)))))...)))))....))))))).).)).)))))....................... (-16.61 = -18.55 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:46 2011