| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,466,258 – 1,466,392 |
| Length | 134 |
| Max. P | 0.966898 |
| Location | 1,466,258 – 1,466,392 |
|---|---|
| Length | 134 |
| Sequences | 6 |
| Columns | 138 |
| Reading direction | reverse |
| Mean pairwise identity | 81.15 |
| Shannon entropy | 0.35474 |
| G+C content | 0.45704 |
| Mean single sequence MFE | -39.47 |
| Consensus MFE | -27.25 |
| Energy contribution | -29.03 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.966898 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1466258 134 - 24543557 AGUCUUAUGAGAAUGCUUAGGGGCGAGUCCUGCCAACUUGGCAGGGCUUCAAACUCACUAAACUCAUACGCCCCGUGGGCCGCCCUGU---UUAUUUGAUAUUCGUGC-UAGUUUCUAUACGAAGCAAAUUAUUUCCA .......((..((((....(((((((((((((((.....))))))))).....................((((...))))))))))..---..(((((...((((((.-(((...))))))))).)))))))))..)) ( -43.00, z-score = -2.63, R) >droAna3.scaffold_13337 21310989 118 + 23293914 AGUCUCAUGAAAAUGCUU--AGAC-UGCCAAGCCAAGUUGGCAAG-------------CAAACUCAUACGCCCUGUUGGCUCUCCCAUGUCGUGCUCAGGACUCGAAUAUAUUUUUCACAUAACACAAAGAAUA---- ((((((((((...((((.--....-((((((......))))))))-------------)).........(((.....))).........)))))....))))).(((.......))).................---- ( -21.20, z-score = 0.78, R) >droEre2.scaffold_4784 1451972 131 - 25762168 AGUCUUAUGAAAAUGCUUG-GGGCGAGUCCUGCCAACUUGGCAGGGCUUCAAA--AACUAAACUCAUACGCCCCGUGGGCCGCUCUGU---UUAUUUGAUAUUCGUGC-UAGUUCCUAUACGAAGCAAAUGAUUUCUA ........((((......(-((((((((((((((.....))))))))).....--..............((((...))))))))))..---(((((((...((((((.-(((...))))))))).))))))))))).. ( -42.60, z-score = -2.95, R) >droYak2.chr3L 1424451 131 - 24197627 AGUCUUGGGAAAAUGCUUA-GGGCGAGUCCUGCCAACUUGGCAAGGCUUCAAA--AACUAAACUCAUACGCCCCGUGGGCCGCCCUGU---UUAUUUGAUAUUCGUGC-UAGUUCCUAUACGAAGCAAAUUAUUUCCA .......(((((.....((-(((((((((.((((.....)))).)))).....--..............((((...))))))))))).---..(((((...((((((.-(((...))))))))).)))))..))))). ( -41.00, z-score = -2.33, R) >droSec1.super_2 1502414 131 - 7591821 AGUCUUAUGAGAAUGCUUA-GGGCGAGUCCUGCCAACUUGGCAGGGCUUCAAA--AACUAAACUCAUACGCCCCGUGGGCCGCCCUGU---UUAUUUGAUAUUCGUGC-UAGUUCCUAUACGAAGCAAAUUAUUGCCA ..........(((((..((-((((((((((((((.....))))))))).....--..............((((...))))))))))).---.)))))....((((((.-(((...)))))))))((((....)))).. ( -44.50, z-score = -3.12, R) >droSim1.chr3L 1056683 131 - 22553184 AGUCCUAUGAGAAUGCUUA-GGGCGAGUCCUGCCAACUUGGCAGGGCUUCAAA--AACUAAACUCAUACGCCCCGUGGGCCGCCCUGU---UUAUUUGAUAUUCGUGC-UAGUUCCUAUACGAAGCAAAUUAUUGCCA ..........(((((..((-((((((((((((((.....))))))))).....--..............((((...))))))))))).---.)))))....((((((.-(((...)))))))))((((....)))).. ( -44.50, z-score = -3.11, R) >consensus AGUCUUAUGAAAAUGCUUA_GGGCGAGUCCUGCCAACUUGGCAGGGCUUCAAA__AACUAAACUCAUACGCCCCGUGGGCCGCCCUGU___UUAUUUGAUAUUCGUGC_UAGUUCCUAUACGAAGCAAAUUAUUUCCA .............(((....((((((((((((((.....))))))))).....................(((.....))))))))................((((((...........)))))))))........... (-27.25 = -29.03 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:40 2011