| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,458,102 – 1,458,209 |
| Length | 107 |
| Max. P | 0.828348 |
| Location | 1,458,102 – 1,458,209 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 65.64 |
| Shannon entropy | 0.52785 |
| G+C content | 0.35469 |
| Mean single sequence MFE | -18.04 |
| Consensus MFE | -8.44 |
| Energy contribution | -9.00 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828348 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1458102 107 + 24543557 CACUGAGAAAAAAAAAAGAAAAAAAGUAACGCAAUUGAAGCAGCGCAAAGAAGUUGCCAAGAACAGUGCAUCCAUUUCAACUUUAGAUGGAAUAUUCUCAAUUAAGA--- ...((((((.....................(((.(((..(((((........))))))))......))).(((((((.......)))))))...)))))).......--- ( -20.80, z-score = -2.10, R) >droSim1.chr3L 1048379 94 + 22553184 ----------CACUGAGAAAAAAAAGUAUGGCAAUCGAAGCAGCAUAAAUAAGUUGCCUA-AACAG--CAUCCAUUCCAACUUCAGAUGGAAUAUUCUCAAUUAAGA--- ----------...((((((...........((.......(((((........)))))...-....)--)....((((((.(....).)))))).)))))).......--- ( -18.34, z-score = -1.91, R) >droSec1.super_2 1494382 94 + 7591821 ----------CACUGAGAAAAAAAAGUAUAGCAAUCGAAGCAGCAUAAAUAGGUUGCCAA-GACAG--CAUCCUUUCCAACUUCAGAUGGAAUAUUCUCAAUUAAGA--- ----------...((((((...........((..((...(((((........)))))...-))..)--).....(((((.(....).)))))..)))))).......--- ( -19.70, z-score = -2.19, R) >droYak2.chr3L 1415949 92 + 24197627 ---------CACUGAGAAAAAAACAGUAUCAACAGCGAAUAAGCAUAGAAAUGUUAACCA-GACAG--------UCGCAACCACAGAUGGACGCUUUUUUAUUGAAUUCA ---------.((((.........)))).....(((..((.((((.......((((.....-))))(--------((.((........))))))))).))..)))...... ( -13.30, z-score = -0.44, R) >consensus __________AACUAAAAAAAAAAAGUAUCGCAAUCGAAGCAGCAUAAAUAAGUUGCCAA_AACAG__CAUCCAUUCCAACUUCAGAUGGAAUAUUCUCAAUUAAGA___ .............((((((....................(((((........))))).............((((((.........))))))...)))))).......... ( -8.44 = -9.00 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:39 2011