| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,446,099 – 1,446,189 |
| Length | 90 |
| Max. P | 0.505352 |
| Location | 1,446,099 – 1,446,189 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 88.28 |
| Shannon entropy | 0.18780 |
| G+C content | 0.64065 |
| Mean single sequence MFE | -25.28 |
| Consensus MFE | -24.80 |
| Energy contribution | -24.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.59 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1446099 90 + 24543557 GUCGGCACGCCCUGGCCAGAAAUCGGCGACGCCCGCACCUCCAGUGGGCGUUUUGACGACUCUCUCUCU----GCGAACUGCAAUCCACUCCAA ((((.((.......((((....).)))(((((((((.......))))))))).)).))))........(----((.....)))........... ( -26.40, z-score = -0.36, R) >droSim1.chr3L 1036722 75 + 22553184 GUCGGCACGCCCUGGCCAGAAAUCGGCGACGCCCGCACCUCCAGUGGGCGUUUUGACGACUCUCUCU------GCGAACUG------------- ((((.((.......((((....).)))(((((((((.......))))))))).)).)))).......------........------------- ( -25.00, z-score = -0.47, R) >droSec1.super_2 1482662 75 + 7591821 GUCGGCACGCCCUGGCCAGAAAUCGGCGACGCCCGCACCUCCAGUGGGCGUUUUGACGACUCUCUCU------GCGAACUG------------- ((((.((.......((((....).)))(((((((((.......))))))))).)).)))).......------........------------- ( -25.00, z-score = -0.47, R) >droYak2.chr3L 1403908 76 + 24197627 GUCGGCACGCCCUGGCCAGAAAUCGGCGACGCCCGCACCUCCAGUGGGCGUUUUGACGACUCUCUCUCU-----CUUCCUG------------- ((((.((.......((((....).)))(((((((((.......))))))))).)).)))).........-----.......------------- ( -25.00, z-score = -1.19, R) >droEre2.scaffold_4784 1429812 81 + 25762168 GUCGGCACGCCCUGGCCAGAAAUCGGCGACGCCCGCACCUCCAGUGGGCGUUUUGACGACUCUCUCUUUCUCUGCGAACUG------------- ((((.((.......((((....).)))(((((((((.......))))))))).)).)))).....................------------- ( -25.00, z-score = -0.48, R) >consensus GUCGGCACGCCCUGGCCAGAAAUCGGCGACGCCCGCACCUCCAGUGGGCGUUUUGACGACUCUCUCU_U____GCGAACUG_____________ ((((.((.......(((.......)))(((((((((.......))))))))).)).)))).................................. (-24.80 = -24.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:37 2011