| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,433,722 – 1,433,833 |
| Length | 111 |
| Max. P | 0.623305 |
| Location | 1,433,722 – 1,433,833 |
|---|---|
| Length | 111 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 70.52 |
| Shannon entropy | 0.60905 |
| G+C content | 0.43998 |
| Mean single sequence MFE | -22.15 |
| Consensus MFE | -12.38 |
| Energy contribution | -12.13 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.61 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1433722 111 + 24543557 ACCACUUGGCAUGUGCCAAGGAAAUGGACAAACGGCCAG--CACUUGAAAACCAAAACC-AGAAGUGACCCAAUAUCCACUUGAAUUUCACUGCGUUUAGUUUCGUUUCCCGAA- ....((((((....))))))((((((((((((((..(((--...(((.....)))....-..(((((..........)))))........)))))))).).)))))))).....- ( -23.40, z-score = -0.24, R) >droEre2.scaffold_4784 1417460 112 + 25762168 ACCACUUGGCAUGUGCCAAGGAAAUGGACAAAUGGUCAG--CACUUGAGAACCCAAAACCAGAAGUGACCCAAUAUCCACUUGAAUUUCACUGCGUUUAGUUUCGUUUCCAAAA- .....(((((....)))))((((((((((....(((...--(....)...)))..((((((((((((..........)))))(.....).))).)))).).)))))))))....- ( -24.20, z-score = -0.23, R) >droYak2.chr3L 1391511 112 + 24197627 ACCACUUGGCAUGUGCCAAGGAAAUGGACAAGCGGCCAG--CACUUGAAAACCAAAACC-AGAAGUGACCCAAUAUCCACUUGAAUUUCAAUGCGUUUAGUUUCGUUUCCCAAAA ....((((((....))))))((((((((...((.....(--((.((((((..((.....-...((((..........))))))..))))))))).....))))))))))...... ( -24.40, z-score = -0.47, R) >droSec1.super_2 1470425 111 + 7591821 ACCACUUGGCAUGUGCCAAGGAAAUGGACAACCGGCCAG--CACUUGAAAACCAAAACC-AGAAGUGACCCAAUAUCCACUUGAAUUUCACUGCGUUUAGUUUCGUUUCCCGAA- ....((((((....))))))(((((((((....((....--(....)....)).(((((-(((((((..........)))))(.....).))).)))).).)))))))).....- ( -22.70, z-score = -0.01, R) >droSim1.chr3L 1024349 112 + 22553184 ACCACUUGGCAUGUGCCAAGGAAAUGGACAAACGGCCAG--CACUUGAAAACCAAAACCCAGAAGUGACCCAAUAUCCACUUGAAUUUCACUGCGUUUAGUUUCGUUUCCCGAA- ....((((((....))))))((((((((((((((..(((--...(((.....))).......(((((..........)))))........)))))))).).)))))))).....- ( -23.40, z-score = -0.22, R) >droAna3.scaffold_13337 21277970 100 - 23293914 --CACUUGGCAUGUGCCAGGGAAAUGGACAAAUGACCGGGGCACUUGAAAACCAAAACC-AGAAGUGACCUAAUAUCCACUUGAAUUUCA----------UUUCGUUUCCGAA-- --..((((((....))))))(((((((((((.((....((((((((.............-..))))).)))......)).)))...))))----------)))).........-- ( -24.06, z-score = -0.62, R) >droWil1.scaffold_180698 8902433 86 - 11422946 AGUAUUUGGCAUGUGCCAAGGAAAUGGACA--------------UUUAAAACCUAAAACCAGAAGUGACCCAAUGUCCACUUGAAUUUCA--------------AUUUCCCAAA- .....(((((....)))))(((((((((((--------------((....((............)).....)))))))).(((.....))--------------))))))....- ( -18.10, z-score = -1.38, R) >droVir3.scaffold_13049 3551598 96 + 25233164 GACACUUGGCAUGUGCCAAGGAAAUGGACAUGGAACACGGUUACCU-AAAACCAAAAA-CAGAAGUGCCUACGAGUCCACUUGAAUUACAUGCCCAAA----------------- ....((((((....))))))....(((.((((......((((....-..)))).....-............((((....)))).....)))).)))..----------------- ( -24.10, z-score = -1.87, R) >droMoj3.scaffold_6654 2085278 89 - 2564135 GACACUUGGCAUGUGCCAAGGAAAUGGACAUGGAACACGGUCACCC-AAAACCAAAAAACAGAAGUGCCUGCGAGUCCACUUGGAUUACA------------------------- ....((((((....))))))....(((((.........(((.....-...)))......(((......)))...)))))...........------------------------- ( -20.70, z-score = -0.09, R) >droGri2.scaffold_15110 7717880 87 + 24565398 GACACUUGGCAUGUGCCAGGGAAAUGAA-AUGA---ACUGAUACCC-AAAACCAAUAAACAGAAGUGC------GUCCACUUGAAUUACAUUCCCGAA----------------- ......((((....))))(((((.((..-....---.(((......-............)))(((((.------...)))))......)))))))...----------------- ( -16.47, z-score = -0.99, R) >consensus ACCACUUGGCAUGUGCCAAGGAAAUGGACAAACGGCCAG__CACUUGAAAACCAAAAACCAGAAGUGACCCAAUAUCCACUUGAAUUUCACUGCGUUU__UUUCGUUUCCCAAA_ ....((((((....))))))..........................................(((((..........)))))................................. (-12.38 = -12.13 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:36 2011