| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,116,527 – 4,116,597 |
| Length | 70 |
| Max. P | 0.507665 |
| Location | 4,116,527 – 4,116,597 |
|---|---|
| Length | 70 |
| Sequences | 5 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 82.67 |
| Shannon entropy | 0.29883 |
| G+C content | 0.46104 |
| Mean single sequence MFE | -17.48 |
| Consensus MFE | -10.50 |
| Energy contribution | -11.02 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.507665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4116527 70 - 23011544 ----GCUGGAGCACGACGAGUAAUGGGAAGACAUUAGUUGGCGUUCCAUUUCAAACAGAAUAAAAUGGGACGCC ----((....))....(((.(((((......))))).)))(((((((((((...........))))))))))). ( -22.00, z-score = -3.53, R) >droEre2.scaffold_4929 4174837 72 - 26641161 GUCAGCUGGGGCACAACGAGAAAUGGAAAGACAUUAGUUUAUGUUCCAGUUCGAAGAAAAUA--AUGGGGUGCU .((((((((((((.(((....((((......)))).)))..)))))))))).))........--.......... ( -15.70, z-score = -1.12, R) >droYak2.chr2L 4134352 62 - 22324452 ----GCUGGAGCACCAGGAGAAAUGGGAAGACAUUAGUU------CUAUUUCAAACAAAAUA--AUGUGAUGCC ----.((((....))))..(((((((((.........))------)))))))..........--.......... ( -11.50, z-score = -0.69, R) >droSec1.super_5 2215304 68 - 5866729 ----GCUGGAGCACGACGAGAAAUGGGAAGACAUUAGUUGGCGUUCCAUUUCAAACAGAAUA--AUGGGGCGCC ----((....)).((((....((((......)))).))))((((((((((((.....))..)--))))))))). ( -19.10, z-score = -2.06, R) >droSim1.chr2L 4071744 68 - 22036055 ----GCUGGAGCACGACGAGAAAUGGGAAGACAUUAGUUGGCGUUCCAUUUCAAACAGAAUA--AUGGGGCGCC ----((....)).((((....((((......)))).))))((((((((((((.....))..)--))))))))). ( -19.10, z-score = -2.06, R) >consensus ____GCUGGAGCACGACGAGAAAUGGGAAGACAUUAGUUGGCGUUCCAUUUCAAACAGAAUA__AUGGGGCGCC ....((....)).......(((((((((.(((....)))....)))))))))...................... (-10.50 = -11.02 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:24 2011