| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,414,141 – 1,414,301 |
| Length | 160 |
| Max. P | 0.593520 |
| Location | 1,414,141 – 1,414,301 |
|---|---|
| Length | 160 |
| Sequences | 5 |
| Columns | 181 |
| Reading direction | forward |
| Mean pairwise identity | 62.17 |
| Shannon entropy | 0.65138 |
| G+C content | 0.37961 |
| Mean single sequence MFE | -37.13 |
| Consensus MFE | -10.72 |
| Energy contribution | -12.47 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1414141 160 + 24543557 AUCAGUGAUGCCCCUGAUUA------ACGGCUAAUUCCAAUGCUCGAAUUA---------UAUAAGAUAACUUGUUGAAUGUCGUAAGAACGCCAAUCUUUUAUUUGACUAAUUUUACUUCGAAGUUAGU--AUGGCUCUGGCUUGUU----AAGACCAUAGCCAAUUUGGCAUCACUGUU ..((((((((((........------..(((((((((........))))))---------.(((((....)))))......((....))..))).............(((((((((.....)))))))))--.(((((.(((((....----.)).))).)))))....)))))))))).. ( -44.40, z-score = -3.66, R) >droEre2.scaffold_4784 1403073 180 + 25762168 ACCAGUGAUGCUCCUGAUUACGGCUAACCUUAAAACAAAUUACACAAGAUGACUUUGUCUUAAGAGAUUCCUGUUUGCA-GUUGUCGGAAGCCCGCUGCUUUAUUUGGCUACUUUUACCUGGCCAUUUCUUCGUAGACCUGGCUUAGUUUCGUUGACGAUAGCCAGGUUGCCAACACUAUU ..(((((..(((.(((((.((.((.((((((((.(((((((((....).))).))))).)))))((....))))).)).-)).))))).))).))))).......((((((........)))))).......(..(((((((((..(((.....)))...)))))))))..)......... ( -48.70, z-score = -1.87, R) >droYak2.chr3L 1376619 136 + 24197627 AACAGUGAUGCCCCCGAUUA------------ACGGCUAGUUCCUAAAACG--------UUAAAAUAUAA-UAUAAGAAUGCUGUCUG------------------------UUUUACCUGGAAAUUCCCUCGUAGAUCUGGCUUACUUUUGUAGGCCAUAGCUAAGUGGCCAGCACUUUU ...((((..(((.....(((------------(((..(((...)))...))--------)))).......-.........(((((...------------------------.(((((..((......))..)))))...(((((((....)))))))))))).....)))...))))... ( -32.00, z-score = -1.04, R) >droSec1.super_2 1456088 148 + 7591821 AUCAGUGAUGCGCCUGAUUA------ACUUCUAAAUCCAAUGCUCGAAUUA---------UAUAAGAUAACUAUUUGAAUGUUGUAAGAAACCCAAUCUUUUAUAUGGCUGUUUUUACCUGGAACU------AUAAAUCUGGCUU------------GCUAGCCAAGUUGGCAUCACAAUU ....(((((((.........------.........((((((..((((((..---------............))))))..)))(((((((..(((..........)))...)))))))..)))...------...((..(((((.------------...)))))..)).))))))).... ( -31.04, z-score = -1.35, R) >droSim1.chrU 15670310 147 + 15797150 AUCAGUGAUGCGCCUGAUUA------ACUUCUAAAUCCAAUGCUCGAAUUA---------UAUAAGAUAACUAAUUGAAUGUUGUAAGAAACCCAAUCUUUAA-AUGGCUGUUUUUACCUGGAACU------AUAAAUCUGGCUU------------GCUAGCCAAGUUGGCAUCACUAUU ...((((((((.........------.........((((((..((((.(((---------(.....))))....))))..)))(((((((..(((........-.)))...)))))))..)))...------...((..(((((.------------...)))))..)).))))))))... ( -29.50, z-score = -1.14, R) >consensus AUCAGUGAUGCCCCUGAUUA______ACUUCUAAAUCCAAUGCUCGAAUUA_________UAUAAGAUAACUAUUUGAAUGUUGUAAGAAACCCAAUCUUUUAUAUGGCUAUUUUUACCUGGAAAUU_____AUAGAUCUGGCUU__U______G_CGAUAGCCAAGUUGGCAUCACUAUU ...((((((((........................................................................((((((...(((..........)))....)))))).....................(((((................))))).....))))))))... (-10.72 = -12.47 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:34 2011