| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,400,538 – 1,400,658 |
| Length | 120 |
| Max. P | 0.611312 |
| Location | 1,400,538 – 1,400,658 |
|---|---|
| Length | 120 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 63.99 |
| Shannon entropy | 0.81057 |
| G+C content | 0.49167 |
| Mean single sequence MFE | -37.02 |
| Consensus MFE | -7.41 |
| Energy contribution | -7.33 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.80 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.20 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1400538 120 + 24543557 AAGGUGUCUACCGAUCCCAGGGUAUCCAAAAUACCUCCGAUAUGUGUGGAUCUUAUUGCUAUAUUUGCUGGCCUGGUUCCUGGUUUUUUGGGAGCCAUACGGCCUCCGACAAAGACACCG ..(((((((...(((((((((((((.....))))))........)).)))))............(((..(((((((((((..(....)..)))))))...))))..)))...))))))). ( -45.40, z-score = -3.71, R) >droSim1.chr3L 998221 120 + 22553184 AAGGUGUCUACCGACCCCAGGGUAUCCAAAAUACCUCCGAUAUGUGUGGAUCUUAUUGCUAUAUUUGCUGGCCUGGUUCCUGGUCUUUUGGGAGCCAUACGGCCUGCGACAAAGACAUUG ..(((((((....(((....)))(((((..(((.......)))...))))).............((((.(((((((((((..(....)..)))))))...)))).))))...))))))). ( -39.30, z-score = -1.82, R) >droYak2.chr3L 1362847 120 + 24197627 ACGGUGUCUACCGAUUCCAGGUCAUCCAAAAUACCUCCGAUAUGUGUGGAUCUUAUUGCUAUAUUUGCUGGCCUGGUUCAUGGUUUUUUGGGAGCCAUAUGGCCUCCGCCAAAGACACCG .((((((((...((..((((((((((((..(((.......)))...)))).......((.......)))))))))).)).((((.....((..(((....)))..)))))).)))))))) ( -43.70, z-score = -3.54, R) >droEre2.scaffold_4784 1389349 120 + 25762168 AAGGUGUCUACCGAUUCCAGGGCAGCCAAAAUACCUUCGAUAUGUGUGGAUCUUAUUGCUAUAUUUGCUGGCUUGGUUCAUGGUUUUUUGGGAGCCAUACGGCCUACGCCAAAGACACCA ..(((((((...((..(((((.((((..(((((....(((((...........)))))...))))))))).))))).))(((((((.....)))))))..(((....)))..))))))). ( -39.40, z-score = -1.90, R) >droSec1.super_2 1442863 120 + 7591821 AAGGUGCCUACCGAUCCCAGGGUAUCCAAAAUACCUUCGAUAUGUGUGGAUCUUAUUACUAUAUUUGCUGGCCUGGUUCCUGGUCUUUUGGGAGCCAUACGGCCUGCGACAAAGACACCG ..((((.((...(((((((((((((.....))))))........)).)))))............((((.(((((((((((..(....)..)))))))...)))).))))...)).)))). ( -43.70, z-score = -3.36, R) >droAna3.scaffold_13337 21247215 120 - 23293914 AAGGUGUAUAAUAAUACCCAGAAAGCCGAAGUACCUCCAUUACUUCUUCAUAUUAAUACUGUACGUUUUCGCAUGGUUUUUAAUAUUUCUUGAGCCGUAUGGACUUCGCAAGAGGCAUCG ..((.((((....)))))).....(((((((((.......))))))...(((((((.(((((.((....)).)))))..))))))).(((((((((....)).))...)))))))).... ( -25.60, z-score = -1.18, R) >dp4.chrXR_group3a 765031 120 - 1468910 AAAGUGUCUGCCAGUGCCAGGAGAGCCGAAUAUAUUCCGCUACUACGAGGUAUUGGUGCUCUGUGUCCUGGCCUGGCUUCUCCUAAUCUGGGAGCCCUACAGCCUUCGUGUGCGACAUUG ..((((((.(((((.((((((((((((.(((((....((......))..))))).).))))....))))))))))))..(((((.....))))).......(((.....).)))))))). ( -44.90, z-score = -2.52, R) >droPer1.super_23 927227 120 - 1662726 AAAGUGUCUGCCAGUGCCAGGAGAGCCGAAUAUAUUCCGCUACUACGAGGUAUUGGUGCUCUGUGUCCUGGCCUGGCUUCUCCUAAUCUGGGAGCCCUACAGCCUUCGAGUGCGACAUUG ..((((((.(((((.((((((((((((.(((((....((......))..))))).).))))....))))))))))))..(((((.....))))).......(((.....).)))))))). ( -44.60, z-score = -2.29, R) >droWil1.scaffold_180698 8870438 120 - 11422946 GAAAUGCUUGCCAAUACCGGGACCACCUAAAUAUCUAAACUAUUGGGAGAUUUUCGUGCUAUGCAUUAUGGCAUGGUUUCUGUUAAUCUGGGAACCGUAUAGCUUGCGCUUACGUCAUCG .....((..((..((((.((..((.(((((............)))))(((((..((.(((((((......)))))))...))..))))).))..)))))).))..))............. ( -28.90, z-score = -0.53, R) >droMoj3.scaffold_6654 1137034 120 + 2564135 ACAUUGCUUGCCACUGCCCAGGCCACCAAAGUUCUUGCGCUACUGGGAGAUUAUGAUGCUGUGCCUGCUGGCCUGGAUUCUGAUCAUUGGCGAACCAAUCAGCCAUCGCGUGGGCCACAA ...............(((((.((..(((.(((......)))..)))(((((((.(((.(.(.(((....)))).).))).)))))..((((..........)))))))).)))))..... ( -33.10, z-score = 1.66, R) >droGri2.scaffold_15110 20820660 120 - 24565398 ACGCUGCUUUCCUUUGCCCAGUUUCCCCAACUAUUUUCACUAUUUCCAUAUAAUUGUGCUAUGCAUGCUGGCUUGGCUCCUGGCGCUCCUGGAGCCAUUCAGCAUCCGACUGCGCCAUCG ...............((.(((((.......................((((....))))....(.(((((((..(((((((.((....)).))))))).))))))).)))))).))..... ( -31.90, z-score = -1.78, R) >triCas2.ChLG7 4281808 120 - 17478683 ACCAUGUCUUCCCAACCCAAUCCCUCCUGAUUACGACCGCUACGUCCAAAUCGGCUCCCUUCUAAUCCUUUGUUGGUUCUUGGCAAUCCUGGAACCUUACGGUCUCCGUCUAAGACACUG ....((((((........((((......))))..(((((....(((......)))...................((((((.((....)).))))))...))))).......))))))... ( -23.80, z-score = -1.61, R) >consensus AAGGUGUCUACCAAUCCCAGGGCAUCCAAAAUACCUCCGCUAUGUGUAGAUCUUAUUGCUAUAUUUGCUGGCCUGGUUCCUGGUAUUUUGGGAGCCAUACGGCCUCCGACAAAGACACCG ..((((....((.......))..............................................(((...((((((............))))))..))).............)))). ( -7.41 = -7.33 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:30 2011