| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,391,970 – 1,392,045 |
| Length | 75 |
| Max. P | 0.772783 |
| Location | 1,391,970 – 1,392,045 |
|---|---|
| Length | 75 |
| Sequences | 5 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 93.90 |
| Shannon entropy | 0.10482 |
| G+C content | 0.47611 |
| Mean single sequence MFE | -22.48 |
| Consensus MFE | -17.68 |
| Energy contribution | -18.08 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772783 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1391970 75 + 24543557 CAGUCCUCACUGGUCUGGAUGAAACCACAGUCCAGAGCAAGGGAAACCAGUCUGCAAAUAGACACAGCAAA-CUUC ((((....)))).(((((((.........)))))))((..((....)).(((((....)))))...))...-.... ( -22.50, z-score = -2.18, R) >droSim1.chr3L 989813 75 + 22553184 CAGUCUUCAAUGGUCUGGAUGAAACCACAGUCCAGAGCAAGGGAAGCCAGUCUGCAAAUAGACACAGCAAA-CUUC ..(.((((..((.(((((((.........))))))).))...)))).).(((((....)))))........-.... ( -20.30, z-score = -1.61, R) >droSec1.super_2 1434549 75 + 7591821 CAGUCUUCAAUGGUCUGGAUGAAACCACAGUCCAGAGCAAGGGAAACCAGUCUGCAAAUAGACACAGCAAG-CUUC .((.((((..((.(((((((.........))))))).)).((....)).(((((....)))))...).)))-)).. ( -21.00, z-score = -1.86, R) >droYak2.chr3L 1354214 75 + 24197627 CCAUCUUCAAUGGUCUGGAUGAAACCACAGUCCAGAGCAAGGGAGACAAGUCUGCAAAUAGACACUGCAAA-CUUC ...(((((..((.(((((((.........))))))).))..))))).((((.((((.........)))).)-))). ( -22.90, z-score = -2.43, R) >droEre2.scaffold_4784 1380889 76 + 25762168 CAGUCUUCAAUGGUCUGGAUGAAACCACAGUCCAGAGCAAGGGAGACAAGUCUGCAAAUAGACACUGCAAAACUUC ..((((((..((.(((((((.........))))))).))..))))))..(((((....)))))............. ( -25.70, z-score = -3.24, R) >consensus CAGUCUUCAAUGGUCUGGAUGAAACCACAGUCCAGAGCAAGGGAAACCAGUCUGCAAAUAGACACAGCAAA_CUUC ..........((.(((((((.........))))))).)).((....)).(((((....)))))............. (-17.68 = -18.08 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:26 2011