| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,108,264 – 4,108,360 |
| Length | 96 |
| Max. P | 0.881207 |
| Location | 4,108,264 – 4,108,360 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 83.37 |
| Shannon entropy | 0.29032 |
| G+C content | 0.48813 |
| Mean single sequence MFE | -21.08 |
| Consensus MFE | -16.10 |
| Energy contribution | -17.34 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881207 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4108264 96 - 23011544 CCCAAAACGCCAACAGAAAUGUUGGCC-CAAAAUGUUUUCACCCCCCA-------CACUUCACUGUGUUCGGUCCACAGCUUCUGACAUAGGCUAACGAAAACU ........(((((((....))))))).-......((((((...((..(-------(((......))))..)).....(((((.......)))))...)))))). ( -26.40, z-score = -3.66, R) >droEre2.scaffold_4929 4166546 102 - 26641161 CCCAAAACGCCAACAGAACUGUUGGCC-C-AAAUGUUUUUCCACACCCCACCCACCUCCUCACAGUCAUCGGUCCACAAUUUCUGACAUAGGCUAACGAAAACU ........(((((((....))))))).-.-....((((((........................((((..(((.....)))..))))...(.....))))))). ( -14.70, z-score = -0.34, R) >droYak2.chr2L 4126009 101 - 22324452 CCCAAAACGCCAACAGAAAUGUUGGCC-CAAAAUGUUUUUCCCCUCUCCACUC--CCCCGCACGGCCAUCGGUCCACAGUUUCUGACAUAGGCUAACGAAAACU ........(((((((....))))))).-.........................--...((...((((....(((..........)))...))))..))...... ( -19.50, z-score = -0.85, R) >droSec1.super_5 2207118 89 - 5866729 CCCAAAACGCCAACAGAAAUGUUGGCCAGAAAAUGUUU--------CC-------CCCUUCACUGUGUUCGGUCCACAGCUUCUGACAUAGGCUAACGAAAACU .((.....(((((((....)))))))(((((..(((..--------((-------..(........)...))...)))..))))).....))............ ( -20.80, z-score = -1.72, R) >droSim1.chr2L 4063530 97 - 22036055 CCCAAAACGCCAACAGAAAUGUUGGCCAGAAAAUGUUUUCACCCGCCC-------CCCUUCACUGUGUUCGGUCCACAACUUCUGACAUAGGCUAACGAAAACU ........(((((((....)))))))........((((((....(((.-------........(((((.(((..........)))))))))))....)))))). ( -24.00, z-score = -2.74, R) >consensus CCCAAAACGCCAACAGAAAUGUUGGCC_CAAAAUGUUUUCACCC_CCC_______CCCUUCACUGUGUUCGGUCCACAGCUUCUGACAUAGGCUAACGAAAACU ........(((((((....)))))))........((((((......................(((((.((((..........)))))))))(....))))))). (-16.10 = -17.34 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:23 2011