| Sequence ID | dm3.chr2L |
|---|---|
| Location | 442,157 – 442,208 |
| Length | 51 |
| Max. P | 0.546158 |
| Location | 442,157 – 442,208 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 86.27 |
| Shannon entropy | 0.22270 |
| G+C content | 0.34971 |
| Mean single sequence MFE | -8.55 |
| Consensus MFE | -6.62 |
| Energy contribution | -7.12 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.546158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 442157 51 + 23011544 UUUUGCUAGUAUUCCCUAAUCAUUUUUUUGAGUGAACCAAACUCGAAGAGC .......................((((((((((.......)))))))))). ( -8.50, z-score = -1.59, R) >droEre2.scaffold_4929 494614 50 + 26641161 UAUUGCAGGCAUUCUUCAAUAUUUUUUUUGAGUGAUCCAA-CUCGAAUAGC (((((.((.....)).))))).....(((((((......)-)))))).... ( -8.70, z-score = -1.27, R) >droSec1.super_14 426082 51 + 2068291 UUUUCCUAGUAUUCCCUAAUCAUUUUUUUGAGUGAUCCAAACUCGAAGAGC .......................((((((((((.......)))))))))). ( -8.50, z-score = -1.90, R) >droSim1.chr2L 449064 51 + 22036055 UUAUGCUAGUAUUCCCUAAUCAUUUUUUUGAGUGAUCCAAACUCGAAGAGC .......................((((((((((.......)))))))))). ( -8.50, z-score = -1.64, R) >consensus UUUUGCUAGUAUUCCCUAAUCAUUUUUUUGAGUGAUCCAAACUCGAAGAGC .......................((((((((((.......)))))))))). ( -6.62 = -7.12 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:52 2011