| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,376,378 – 1,376,477 |
| Length | 99 |
| Max. P | 0.707003 |
| Location | 1,376,378 – 1,376,477 |
|---|---|
| Length | 99 |
| Sequences | 10 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 69.25 |
| Shannon entropy | 0.62843 |
| G+C content | 0.55117 |
| Mean single sequence MFE | -24.43 |
| Consensus MFE | -14.73 |
| Energy contribution | -14.55 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.47 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.707003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1376378 99 - 24543557 -------------CCCCUGCUCAUCUGCCCCUUCCCCUUUUGCUCCCCUUUUCUUGGCGUGGUAAUUAUUCGCGCUCAGGUGAGUACGCGAGUCUGCAAAGCGUAACUUGUA -------------....((((((((((............................(((((((.......))))))))))))))))).((((((.(((.....))))))))). ( -25.78, z-score = -1.90, R) >droSim1.chr3L 974727 98 - 22553184 -------------CCCCUGCCCAUCUGCCCCUUCCCCGUUCGCUCCCC-UUUCUUGGCGUGGUAAUUAUUCGCGCUCAGGUGAGUACGCGAGUCUGCAAAGCGUAACUUGUA -------------........................(((((((...(-((.((((((((((.......)))))).)))).)))...(((....)))..)))).)))..... ( -22.00, z-score = -0.15, R) >droSec1.super_2 1418792 102 - 7591821 -------CCCAUCCCCCUGCCC--CUGCGCCUUCCCCGUUAGCUCCCC-UUUCUUGGCGUGGUAAUUAUUCGCGCUCAGGUGAGUACGCGAGUCUGCAAAGCGUAACUUGUA -------...............--.(((((...........((((.((-(.....(((((((.......))))))).))).))))..(((....)))...)))))....... ( -23.30, z-score = -0.08, R) >droYak2.chr3L 1337458 83 - 24197627 ----------------------------CCCCCAGCCACCUGCUCCCC-UUUCUUGGCGUGGUAAUUAUUCGCGCUCAGGUGAGUACGCGAGUCUGCAAAGCGUAACUUGUA ----------------------------......((((((((......-......(((((((.......))))))))))))).))..((((((.(((.....))))))))). ( -23.70, z-score = -1.05, R) >droEre2.scaffold_4784 1364951 104 - 25762168 -----CCCCCAGCCACCUGC-CACCUGCCCC-GCCCCUUUCGCUCCCC-UUUCUUGGCGUGGUAAUUAUUCGCGCUCAGGUGAGUACGCGAGUCUGCAAAGCGUAACUUGUA -----............(((-((((((....-((.......)).....-......(((((((.......))))))))))))).))).((((((.(((.....))))))))). ( -25.50, z-score = -0.32, R) >droAna3.scaffold_13337 21222345 79 + 23293914 --------------------------------CCCCCUCCUGCCUGCU-UUUCUUGGCGUGGUAAUUAUUCGCGCUUAGCUGAAUACGCGAGUCUGCAAAGCGUAACUUGUA --------------------------------........((((((((-......)))).)))).......((((((.((.....((....))..)).))))))........ ( -19.50, z-score = -0.67, R) >dp4.chrXR_group3a 738134 111 + 1468910 CCCCUGCCCCCCUGCCUCGUAUCUCGCAUCUCGCCUC-UUUCCCCACGCUCUUGUGGCGUGGUAAUUAUUCGCGCUCAGGUGAAUACGCGAGUCUGCAAAGCGUAACUUGUA .........................(((.(((((...-.....(((((((.....)))))))....(((((((......))))))).)))))..)))............... ( -28.60, z-score = -1.43, R) >droWil1.scaffold_180698 8840351 98 + 11422946 --------------UGCCCACCGCCCUCCCCUCUUCGCUCUUUUGACCAAGACAUGGCGUGGUAAUUAUUCGCGUUCAGCUGAGUGCGCGAGUCUGCAAAGCGUAACUUGUA --------------(((..(((((((.....((((.(.((....))).))))...)).)))))....((((((((.(......).))))))))..))).............. ( -22.80, z-score = 0.49, R) >droVir3.scaffold_13049 3491467 96 - 25233164 ----------------UAGCCUCUAGCCUCUAGCCCCAGCUUGUGGAAGACGUGUAGCGUGGUAAUUAUUCGCGCUCAGCUGACUGCGCGAGUCUGCAAAGCGUAACUUGUA ----------------..((.(((..((.(.(((....))).).)).))).))((.((((.(((...((((((((..........)))))))).)))...)))).))..... ( -26.20, z-score = 1.08, R) >droMoj3.scaffold_6654 2031142 83 + 2564135 ---------------------------CUGCUCUUCG--UCUGCGCCAAAGACUUGGCGUGGUAAUUAUUCGCGCUCAGCUGACUGCGCGAGUCUGCAAAGCGUAACUUGUA ---------------------------.(((.(((.(--((..((((((....))))))..).....((((((((..........))))))))..)).))).)))....... ( -26.90, z-score = -0.73, R) >consensus _______________CCUGC_C__CUGCCCCUCCCCCUUUUGCUCCCC_UUUCUUGGCGUGGUAAUUAUUCGCGCUCAGGUGAGUACGCGAGUCUGCAAAGCGUAACUUGUA .......................................................(((((((.......)))))))...........((((((.(((.....))))))))). (-14.73 = -14.55 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:21 2011