| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,322,250 – 1,322,352 |
| Length | 102 |
| Max. P | 0.732979 |
| Location | 1,322,250 – 1,322,352 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 74.75 |
| Shannon entropy | 0.52248 |
| G+C content | 0.62661 |
| Mean single sequence MFE | -40.11 |
| Consensus MFE | -22.93 |
| Energy contribution | -25.00 |
| Covariance contribution | 2.07 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.732979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1322250 102 + 24543557 AUAGCCGCCAUAUCCGCCGUAGUAGUUGUAGCCAUUGUAGUAGGGAUUGUAGUAGGGUCCCGGCGGAGGAGGAGGUCCUGGCGGCGGUGGUCCGGGCGGAGG ....(((((....(((((((.((........((.((((....((((((.......)))))).)))).))(((....))).)).)))))))....)))))... ( -39.90, z-score = -0.92, R) >droSim1.chr3L 921457 102 + 22553184 AAAGCCGCCAUAUCCGCCGUAGUAGUUGUAGCCAUUGUAGUAGGGAUUGUAGUAGGGCCCCGGAGGAGGAGGAGGUCCUGGCGGCGGUGGUCCGGGCGGAGG ....(((((....(((((((..........(((((((((((....))))))))((((((((.........)).))))))))).)))))))....)))))... ( -40.20, z-score = -1.13, R) >droSec1.super_2 1364984 102 + 7591821 AUAGCCGCCAUAUCCGCCGUAGUAGUUGUAGCCAUUGUAGUAGGGAUUGUAGUAGGGCCCCGGAGGAGGAGGAGGUCCUGGCGGCGGUGGUCCGGGCGGAGG ....(((((....(((((((..........(((((((((((....))))))))((((((((.........)).))))))))).)))))))....)))))... ( -40.20, z-score = -0.98, R) >droEre2.scaffold_4784 1305057 99 + 25762168 AUAGCCGCCGUAUCCGCCGUAGUAGUUGAAGCCAUUGUAGUAGGGAUUGUAGUAGGGGCCCGG---AGGAGGAGGUCCUGGCGGAGGAGGUCCGGGUGGAGG ....(((((...((((((...............((((((((....)))))))).(((((((..---.....).))))))))))))((....)).)))))... ( -31.70, z-score = 0.23, R) >droYak2.chr3L 1281125 99 + 24197627 AUAGCCGCCAUAUGCGCCGUAGUAGUUGAAGCCAUUGUAGUAGGGAUUGUAGUAGGGCGCCGG---CGGAGGAGGUCCUGGCGGCGGAGGUCCGGGUGGCGG ...((((((...(.((((((....((((..(((((((((((....))))))))..)))..)))---)..(((....))).)))))).)......)))))).. ( -35.60, z-score = 0.28, R) >droAna3.scaffold_13337 16702369 93 - 23293914 ---------AUAGCCGCCAUAGUAGUUGUAGCCAUUGUAGUAGGGAUUGUAGUAUGGCACCGACGGGGGAGGUCCUUGCGGCGGCGGUGGUGGUGGUGGAGG ---------....(((((((..........((((((((.(((((((((((......)).((....))...)))))))))....)))))))).)))))))... ( -32.60, z-score = -1.10, R) >dp4.chrXR_group8 8425208 100 - 9212921 CCAUCCGCCAGGAUAGCCGCCCGGAUAGCCGCCACCCCAUCCUGGAUAGGAUGGGUAUCCUCCAAAGUACGGGGGCUGUGGCGGUGGUGGUCCUGGUGGG-- ....((((((((((.((((((.((....))(((((((((((((....))))))))...(((((.......)))))..))))))))))).)))))))))).-- ( -60.60, z-score = -4.25, R) >consensus AUAGCCGCCAUAUCCGCCGUAGUAGUUGUAGCCAUUGUAGUAGGGAUUGUAGUAGGGCCCCGGAGGAGGAGGAGGUCCUGGCGGCGGUGGUCCGGGUGGAGG ....(((((....(((((((..........(((((((((((....))))))))((((((((.........)).))))))))).)))))))....)))))... (-22.93 = -25.00 + 2.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:16 2011