| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,294,647 – 1,294,711 |
| Length | 64 |
| Max. P | 0.883901 |
| Location | 1,294,647 – 1,294,711 |
|---|---|
| Length | 64 |
| Sequences | 10 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 79.28 |
| Shannon entropy | 0.44708 |
| G+C content | 0.33250 |
| Mean single sequence MFE | -10.56 |
| Consensus MFE | -8.05 |
| Energy contribution | -7.81 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1294647 64 + 24543557 UCAGCCAAAU-AAUUCCAAUUGAUCAGCGAUUGGAACAAGGAAUUUAUUGAAGCAAAUCGUUAGA ...((.....-..(((((((((.....)))))))))(((........)))..))........... ( -11.20, z-score = -1.23, R) >droSim1.chr3L 893214 64 + 22553184 UCAGCCAAAU-AAUUCCAAUUGAUCAGCGAUUGGAACAAGGAAUUUAUUGAAGCAAAUCGUUAGA ...((.....-..(((((((((.....)))))))))(((........)))..))........... ( -11.20, z-score = -1.23, R) >droSec1.super_2 1337212 64 + 7591821 UCAGCCAAAU-AAUUCCAAUUGAUCAGCGAUUGGAACAAGGAAUUUAUUGAAGCAAAUCGUUAGA ...((.....-..(((((((((.....)))))))))(((........)))..))........... ( -11.20, z-score = -1.23, R) >droYak2.chr3L 1253353 64 + 24197627 UCAGCCAAAU-AAUUCCAAUUGAUCAGCGAUUGGAACAAGGAAUUUAUUGAAGCAAAUCGUUAGA ...((.....-..(((((((((.....)))))))))(((........)))..))........... ( -11.20, z-score = -1.23, R) >droEre2.scaffold_4784 1277523 64 + 25762168 UCAGCCAAAU-AAUUCCAAUUGAUCAGCGAUUGGAACAAGGAAUUUAAUGAAGCAAAUCGUUAGA ..........-..(((((((((.....))))))))).......((((((((......)))))))) ( -13.40, z-score = -2.31, R) >droAna3.scaffold_13337 16672070 64 - 23293914 UGAGCCAACU-GAUUUCAAUUGAUUUGCAAUUGGAACAAGGAAUUUAUUGAAGAAAAUCGUUAGA ........((-..(((((((((.....)))))))))..))......................... ( -8.90, z-score = -0.07, R) >droWil1.scaffold_180727 2481792 56 + 2741493 AAAAAAAACU-AGUUCCAAU--------UAUUGGAACAAGGAAUUUAUGAAUGCAAAUCGUUAGA ........((-.((((((..--------...)))))).))......................... ( -8.40, z-score = -1.53, R) >droVir3.scaffold_13049 16674922 62 - 25233164 UCAGCCAACA-AAUUUCAGCUGCAGUUCAGUUGGAAUAAGGAAUUUAUUGAAGCAAAUUGUUA-- ......((((-(((((((((((.....))))))))))..........(((...))).))))).-- ( -10.10, z-score = -0.24, R) >droMoj3.scaffold_6680 6784463 65 + 24764193 UCAGCCAACAGAAUUCCGACUGCAAUUCAGUUGGACUAAGGAAUUUAUUGAAACAAAUUGUUAGA ..............((((((((.....))))))))((((.((.(((........))))).)))). ( -11.30, z-score = -0.98, R) >droGri2.scaffold_15110 20279173 51 - 24565398 ---GCCAACA-GAUUCCGAU--------AA--GGAAUAAGGAAUUUAUUGAAGCAAAUUGUUAGA ---(((((.(-((((((...--------..--.......))))))).)))..))........... ( -8.70, z-score = -1.90, R) >consensus UCAGCCAAAU_AAUUCCAAUUGAUCAGCGAUUGGAACAAGGAAUUUAUUGAAGCAAAUCGUUAGA .............(((((((((.....)))))))))............................. ( -8.05 = -7.81 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:15 2011