| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,288,634 – 1,288,735 |
| Length | 101 |
| Max. P | 0.666382 |
| Location | 1,288,634 – 1,288,735 |
|---|---|
| Length | 101 |
| Sequences | 8 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 73.24 |
| Shannon entropy | 0.51922 |
| G+C content | 0.53984 |
| Mean single sequence MFE | -32.62 |
| Consensus MFE | -15.83 |
| Energy contribution | -15.79 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.666382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1288634 101 - 24543557 ------------CGGAGUCUGUGUGCAAUUUUAAUGAGUUGGAAAUGAUUUGUGCGGGUAACUGGCCGCCAGUUGCCUACGAAGCUCCCACGCCCCUCUAUCCUUCUGCUCAA ------------.((((...(((((((((((....)))))).......(((((..((((((((((...))))))))))))))).....)))))..)))).............. ( -28.50, z-score = -0.93, R) >droSim1.chr3L 887163 101 - 22553184 ------------CGGAGUCUGUGUGCAAUUUUAAUGAGUUGGAAAUGAUUUGUGCGGGUAACUGGCCGCCAGUUGCCUACGAAGCUCCCACGCCCCUUUGUCCCUCUGUCCGU ------------(((((...(((((((((((....)))))).......(((((..((((((((((...))))))))))))))).....)))))..)))))............. ( -27.30, z-score = -0.47, R) >droSec1.super_2 1331162 101 - 7591821 ------------CGGAGUCUGUGUGCAAUUUUAAUGAGUUGGAAAUGAUUUGUGCGGGUAACUGGCCGCCAGUUGCCUACGAAGCUCCCACGCCCCUCUGCCCCUCUGUCCGU ------------(((((...(((((((((((....)))))).......(((((..((((((((((...))))))))))))))).....)))))..)))))............. ( -29.80, z-score = -1.07, R) >droYak2.chr3L 1247187 95 - 24197627 ------------GGGAGCCUGUGUGCAAUUUUAAUGAGUUGGAAAUGAUUUGUGCGGGUAACUGGCCGCCAGUUGC---CACUCCCCCGUUGCGCCCACGCCCCUCUGCU--- ------------(((.((.((.(((((((....(..((((......))))..)...(((((((((...))))))))---)........))))))).)).)))))......--- ( -33.20, z-score = -1.45, R) >droEre2.scaffold_4784 1271516 90 - 25762168 ------------GGGAGCCUGGGUGCAAUUUUAAUGAGUUGGAAAUGAUUUGUGCGGGUAACUGGCCGCCAGUUGCCUGCGAAGCUCCCACGCCCCUCUGCU----------- ------------(((.((.((((.((.......(..((((......))))..)((((((((((((...))))))))))))...)).)))).)))))......----------- ( -41.20, z-score = -3.65, R) >droAna3.scaffold_13337 16666072 102 + 23293914 GGGAUGGGGCAAGGAUGCCUGUGUGCAAUUUUAAUGAGUUGGAAAUGAUUUGUGCGGGUAACUGGCCGCCGGUUGACUACAUAAACCCUCUAGUCAGCGGGG----------- .......(((.((..((((((..(.((.((((((....)))))).))....)..)))))).)).))).((.((((((((...........)))))))).)).----------- ( -31.50, z-score = -0.39, R) >dp4.chrXR_group8 8386362 101 + 9212921 ---------AGGGGCGGCCUGUGUGCAAUUUUAAUGAGUUGGAAAUGAUUUGUGCGGGUAACUGGCCUCCAGUUACCGCUGCCACACACACCCACCCAUUACCUCCCAAU--- ---------.(((..((..((((((((......(..((((......))))..)((((.(((((((...))))))))))))).))))))..))..))).............--- ( -34.20, z-score = -1.36, R) >droPer1.super_32 655083 101 - 992631 ---------AGGGGCGGCCUGUGUGCAAUUUUAAUGAGUUGGAAAUGAUUUGUGCGGGUAACUGGCCUCCAGUUACCGCUGCCACACACACCCUCCCAUUACCUCCCAAU--- ---------.((((.((..((((((((......(..((((......))))..)((((.(((((((...))))))))))))).))))))..)).)))).............--- ( -35.30, z-score = -1.82, R) >consensus ____________GGGAGCCUGUGUGCAAUUUUAAUGAGUUGGAAAUGAUUUGUGCGGGUAACUGGCCGCCAGUUGCCUACGAAGCUCCCACGCCCCUCUGCCCCUCUG_U___ ......................(..(((((((((....)))))).....)))..).(((((((((...))))))))).................................... (-15.83 = -15.79 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:14 2011