| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,188,903 – 1,189,013 |
| Length | 110 |
| Max. P | 0.878337 |
| Location | 1,188,903 – 1,189,013 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.34 |
| Shannon entropy | 0.25892 |
| G+C content | 0.45137 |
| Mean single sequence MFE | -32.66 |
| Consensus MFE | -26.06 |
| Energy contribution | -26.14 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1188903 110 + 24543557 GAAGCGCUAUAACGAAUGAGCUUUCGUUACUAAGUUUUGCUUAU-AUCGCGAAAGCUUUCCACACAUGGUGGUGGAACAGGGAAACAC---------AAGCGGAGUAAGCAGUGUUCCAG (.((((((.(((((((......))))))).........((((((-.((((.....((((((((........)))))).))(....)..---------..)))).)))))))))))).).. ( -34.30, z-score = -2.56, R) >droEre2.scaffold_4784 1180147 109 + 25762168 GAACAGCUAUAAAGAACGAGCUUUCGUUACUAAGUUUAGCUCUCGACCACGAAAGCUUUCCACGCAUGGUGGUGGAACAGGGAAGCA-----------AGCGAAGUAAGCAGUGUUCCAG ((((((((......((((......))))(((..((((.((((((.....(....)..((((((........))))))..))).))))-----------)))..))).)))..)))))... ( -27.90, z-score = -0.31, R) >droYak2.chr3L 1152813 120 + 24197627 AAGCAGCUAUAAAGCACAAGCUUUCGUUACCAAGUUUUGUUUUCGACCAGGAAAGCUUUCCACACAUGGUGGUGGAACAGGGAAGCACCAGCGAAGUAAGCGAAGUAAGCAGUGUUCCAG ..((.(((....)))....(((((((((.(((......((((((......))))))...((((.....)))))))....((......)))))))...)))).......)).......... ( -26.70, z-score = 0.57, R) >droSec1.super_2 1181552 109 + 7591821 GAAGAGCUGUAACGAAUGAGCUUUCGUUACUAAGUUUUGCUUAU-AUCGCGAAAGCUUUCCACACAUGGUGGUGGAACAGGGAAACUC---------AAGCUA-GUAAGCAGUGUUCCAG ..((((((((((((((......)))))))).....(((((....-...)))))))))))((((.....))))(((((((((....)).---------..(((.-...)))..))))))). ( -35.10, z-score = -2.67, R) >droSim1.chr3L 808166 110 + 22553184 GAAGAGCUGUAACGAAUGAGCUUUCGUUACUAAGUUUUGCUUAU-AUAGCGAAAGCUUUCCACACAUGGUGGUGGAACAGGGAAACUC---------AAGCUAUGUAAGCAGUGUUUCAG ((((.(((((((((((......))))))))........((((((-(((((.......((((((........))))))..((....)).---------..)))))))))))))).)))).. ( -39.30, z-score = -4.23, R) >consensus GAAGAGCUAUAACGAAUGAGCUUUCGUUACUAAGUUUUGCUUAU_AUCGCGAAAGCUUUCCACACAUGGUGGUGGAACAGGGAAACAC_________AAGCGAAGUAAGCAGUGUUCCAG .................((((((((((...((((.....)))).....)))))))))).((((.....))))(((((((.(....).............((.......))..))))))). (-26.06 = -26.14 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:08 2011