| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,188,465 – 1,188,565 |
| Length | 100 |
| Max. P | 0.964304 |
| Location | 1,188,465 – 1,188,565 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 92.50 |
| Shannon entropy | 0.13420 |
| G+C content | 0.45400 |
| Mean single sequence MFE | -28.90 |
| Consensus MFE | -22.44 |
| Energy contribution | -23.16 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.86 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.964304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1188465 100 - 24543557 AAGUGCCGCCCACUUGACUUGCCAAAUUAAGUGGGCCUCCACAAUUGACUGCCCAGAAUUAAUUUGCUCAGGCAUUCGAUUCACUUUCUUCACCUUGCGU ..(((..((((((((((.((....))))))))))))...)))((((((.((((((((.....))))....)))).))))))................... ( -26.70, z-score = -2.45, R) >droSim1.chr3L 807684 100 - 22553184 AAGAGCAGCCCACUUGACUUGCCAAAUUAAGUGGGGCUCCACAAUUGACUGCCCAGAAUUAAUUUGUGCAGUCAUUCGAUUCACUUUCUUCACCUUGCGU ..((((..(((((((((.((....)))))))))))))))......(((((((.((((.....)))).))))))).......................... ( -29.10, z-score = -2.63, R) >droSec1.super_2 1181074 100 - 7591821 AAGUGCAGCCCACUUGACUUGCCAAAUUAAGUGGGGCUCCACAAUUGACUGCCCACACUUAAUUUGUGCAGUCAUUCGGUUCACUUUCUUCACCUUGCGU (((((.((((....(((((.(((((((((((((((((.............)))).))))))))))).)))))))...))))))))).............. ( -38.42, z-score = -5.35, R) >droYak2.chr3L 1152298 100 - 24197627 GAAUGCAGCCCACAUGACUUUCCAAAUUAAGUGGGGCUCCACAAUUGACUGCCCAGAAUUAAUUUGUGCAGUCAUUCGAUUCACUUUCUUCGCCUUGUGU ......(((((.(((...............)))))))).(((((.(((((((.((((.....)))).)))))))..(((..........)))..))))). ( -25.36, z-score = -1.62, R) >droEre2.scaffold_4784 1179710 100 - 25762168 AAAUGCAGGCCACAUGACUUCCCAAAUUAAGUGGCGCUCCACAAUUGACUGCCCAGAAUUAAUUUGUGCAGUCAUUCGAUUCACUUUCUUCACCUUGCGU ..(((((((((((.(((.........))).)))))..........(((((((.((((.....)))).)))))))....................)))))) ( -24.90, z-score = -2.24, R) >consensus AAGUGCAGCCCACUUGACUUGCCAAAUUAAGUGGGGCUCCACAAUUGACUGCCCAGAAUUAAUUUGUGCAGUCAUUCGAUUCACUUUCUUCACCUUGCGU ....(((((((((((((.........)))))))))..........(((((((.((((.....)))).)))))))....................)))).. (-22.44 = -23.16 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:07 2011