| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,175,709 – 1,175,787 |
| Length | 78 |
| Max. P | 0.860768 |
| Location | 1,175,709 – 1,175,787 |
|---|---|
| Length | 78 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 62.77 |
| Shannon entropy | 0.50264 |
| G+C content | 0.55110 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -11.22 |
| Energy contribution | -11.23 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.860768 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1175709 78 - 24543557 GCAGCCCACAGUUCGGGAAACUCUGAGGAUUCGGGGUAGCUCAUCAGCUCCUCAAUUCUCCAGCUGUUCAGCUCUUCA---------------- ..(((..((((((.((....))..(((((((.((((.((((....))))))))))))))).))))))...))).....---------------- ( -25.00, z-score = -1.87, R) >droYak2.chr3L 1138744 73 - 24197627 ----------ACUUGGAAAACUCC-ACCCCUCGGAA-AACUC-UGAGCUCCUCAGCUCCCCAGCUCUCCAGCUCCUCAGCUGUUCA-------- ----------...((((....)))-)...((((((.-...))-)))).....(((((....((((....))))....)))))....-------- ( -17.70, z-score = -2.07, R) >droSim1.chr3L 794427 94 - 22553184 GCAGCCCACAGCUCGGGAAACUCUGAGGCUUCGGGGUAGCUCCUCAGCUCCUCAGUUCUCCAGCUGUUCAGCUCUAUAGCUCUUCAUCUCUUCA (((((..((((((.(((((...((((((....((((.....))))....))))))))))).))))))...))).....)).............. ( -29.10, z-score = -1.62, R) >consensus GCAGCCCACAGCUCGGGAAACUCUGAGGCUUCGGGGUAGCUC_UCAGCUCCUCAGUUCUCCAGCUGUUCAGCUCUUCAGCU_UUCA________ ..............(((..((((((......)))))).(((...(((((............)))))...))))))................... (-11.22 = -11.23 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:55:06 2011